Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1766 ATGATTGATCGATGTTGGAGACCAAATCCTGAATGGAGAAAACATAGACAACAATTAGCTACTTGCTCTGTGGGCTATGCTGGAAAGATGACAAACAACATTGGTAAGAGTCTCATCCATTATAAAGTTACTGACCCAAATGATGATCCTATAAATCCCCAACCTGGTACGTTGAGATATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCAAAAAAGACATGAACATTAAACTCATGAAGCCCCTTCTCATTAGTAGTTTCACAACTATTGATGGTCGCGGAGTCAATGTGCACATTGCTGATAATGCATGCTTGATGATATTTAAGGCCACCAACGTAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAGCCCCGGGGATGGTTATGGGGCCAAATGGGAAGGTAATTTCTTTGGGCCAAGTAGATGGAGATGCAATTAGACTGGTCACCGCTTCAAAAATTTGGATTGATCATAATACACTTTATGATTGTGAAGATGGCCTTCTTGATGTCACACGAGGTTCTACTAATGTGACTGTTTCCAATAATTGGTTTAGAGAACAAAATAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTGAGGGACATAAACATGAAAGTTACTGTTGTGTACAATCATTTTGGGCCTAATTGCAACCAACGAATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGGTGCAATATGCCATTGGTGGAAGCATGGGGCCTAGCCTCAAAAGTGAATCTAACCTCTTCATAGCACCTAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTCATACAAATGGGGACAAATGGGAATTTCATTCGGTAAGAGACGCTTTTGAAAATGGAGCCTCCTTCACAGTAACAAAAGGAAGACGAGTACCAAAGCCAAATTATAGCAAAGAACAAAGTTTTAAAGTTGCTGATGTTAAATCTGTAAGATCATTAACAAGATCATCAGGTGCATTTCAAGTTTGA 1035 0.3961 MIDRCWRPNPEWRKHRQQLATCSVGYAGKMTNNIGKSLIHYKVTDPNDDPINPQPGTLRYGASVIQGKVWITFKKDMNIKLMKPLLISSFTTIDGRGVNVHIADNACLMIFKATNVIIHSIRIHHCKAQAPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFREQNKVMLLGHDDGYVRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRKIGHTNGDKWEFHSVRDAFENGASFTVTKGRRVPKPNYSKEQSFKVADVKSVRSLTRSSGAFQV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 47 72 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 228 247 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 84 100 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 250 269 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 290 314 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 148 169 IPR018082 -
Mal4g1766 344 PRINTS Pollen allergen Amb family signature 321 344 IPR018082 -
Mal4g1766 344 Pfam Pectate lyase 86 267 IPR002022 -
Mal4g1766 344 SUPERFAMILY Pectin lyase-like 2 306 IPR011050 -
Mal4g1766 344 SMART amb_all 76 273 IPR002022 -
Mal4g1766 344 PANTHER PECTATE LYASE 1 344 - -
Mal4g1766 344 Gene3D - 1 343 IPR012334 -
Mal4g1766 344 PANTHER PECTATE LYASE 18-RELATED 1 344 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1766 Mal-Chr4 32137063 32138621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1766 30 277 Polysaccharide Lyase AT5G09280 74.194 7.38e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1766 K01728 - gmx:100780437 624.009