LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g1600	ATGGAAAATCAGCCTCCTTCAAATTGTAGAAAGAAAATGGAACAAGAGCTAATTAGAGGACGTGACACAGCAAATCAATTACTTGAAGTAATTGTTCACAAATTGAATATTCTTCATTACCATGCAGATTTAGAAGGGTTAATATTACCCTTTGCTCAAGATCTTGTTCGGAAGGTACTTAGATCATTCACAAATACTCTTTTTCTATTGAACACTAATAATGATTTCTTTAGTGAGGAGAAGGTTTTGCCTATTGATATGAAAGATTTGTCACCATCAAATATTTGCCCAAAGCCTGAAGATGCAGATTATAAAGCTTGCAAGAGTTTAAAAACTCAAAGAGGCTGCTACAAAAGAAAATCAAATGCAGTTACTTGGGAGAAGGATAGCTCGATTTTGATTGAAGATGGCTATGAATGGAGAAAGTATGGACAAAAAAAGATAATGAATGCAAAATACCTTATGAGCTACTACAGATGCAGTTACAAAAGTGATAAAGAATGTGAAGCTATGAAACAAGTGCAGAGAATTCAAGAGGACCCTCCATTGTACAGAACCACATATTATGGCTATCATAATTGCAAAACCTCTTCATTAAATTCAGGCATCTACTCATTTTCATCATCATCGCTTTCTGCATCCACAAAACATGAGCCTAAAGAAGTGATTAATCCCTATCATCACATTGCTCAAAACCAATTATATTCATCAGATTATTCCTCTCTCTCATGTGACTATGAACTTGATTTGAGGCATGCTATTACTATGGTATCATCCACCCAATCTTTTGATCAATTTCATGATGTTTTTGAGCCATGCGGTTTGGATTTTGATTCCAAAGCATGTTTTGGTTCATAA	858	0.3462	MENQPPSNCRKKMEQELIRGRDTANQLLEVIVHKLNILHYHADLEGLILPFAQDLVRKVLRSFTNTLFLLNTNNDFFSEEKVLPIDMKDLSPSNICPKPEDADYKACKSLKTQRGCYKRKSNAVTWEKDSSILIEDGYEWRKYGQKKIMNAKYLMSYYRCSYKSDKECEAMKQVQRIQEDPPLYRTTYYGYHNCKTSSLNSGIYSFSSSSLSASTKHEPKEVINPYHHIAQNQLYSSDYSSLSCDYELDLRHAITMVSSTQSFDQFHDVFEPCGLDFDSKACFGS*	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g1600	285	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	204	264	-	-
	Mal4g1600	285	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	1	203	-	-
	Mal4g1600	285	Gene3D	WRKY domain	118	197	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal4g1600	285	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	204	264	IPR044810	GO:0003700
	Mal4g1600	285	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	1	203	IPR044810	GO:0003700
	Mal4g1600	285	ProSiteProfiles	WRKY domain profile.	129	197	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal4g1600	285	SMART	WRKY_cls	134	196	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal4g1600	285	SUPERFAMILY	WRKY DNA-binding domain	131	196	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal4g1600	285	Pfam	WRKY DNA -binding domain	135	195	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g1600	Mal-Chr4	26350253	26360312	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g1600	12	228	WRKY Transcription Factor Family	AT3G56400	32.895	1.54e-30	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mal4g1600		WRKY	2.8e-22	CL0274