Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1567 ATGAAGGTATTTCGATCTCGCAAATTCTCCAAATCCTTCAAGGAGGTACAATCCCTCGACACCGTCGACGGTGACCGGAGAGTAACGGCCGCCGGCGATTCGTCGGAAGGAATGGATTGGTCGACCATGCTACCGGATCTCCTGGCGGAGATAATTAAACGAGTCGACGTCGCGGAAGAACAGTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGAGATATCACACGTGAGATCGTTAAGTCACCTGAACGTAATGGGAGAATCACTTTTCCTTCTTGTCTTAAACAGCCAGGACCACGCGATCTTCCCCACCAATGTCTTATAAAGCGTAATAAGAAAACCTCCACATTTTACCTCTATCTTTCCCTTACATCATCATTCACAGATAAAGGGAAGTTTTTATTAGCAGCTAGAAGATATAGGTACGGTACCCATACTGAGTATGTTATATCGCTTGATGCTGATGACTTATCACAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGTACCAACTTCACAATCTACGACAGCCAGCCTCCCCATAATGGTGCCAAACCATCATGTGCCAGAGCTAGCCGGCGTTTTGCCAGCAAACAAATTAGCCCTCAAGTTCCTGCTGGTAACTTCGAGGCAGGGGATGTCTCCTACAAGTTCAATCTTTTGAAATCAAGAGGTCCAAGGAGGATGATGTGCTCTCTGAAGTTTCCTGTCTCATCGATGGGTGAAAGTTCAGATAGCAAATCTTTTGATGACCACAAGATGCACCGTAAAGAACATGCTGCTTCTGCGCACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTGCAGTGTTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCTGTGAAGAACTTTCAGCTGGTTGCAACTGTTGACCAAAGCCAACCGGGTGGAAAAGGAGATGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTACAGGCAACCCTTATCCGCCTTCCAGGCGTTTGCCATTTGCTTATCTAGTTTTGGCACTAAACTGGCTTGTGAGTAA 1110 0.4703 MKVFRSRKFSKSFKEVQSLDTVDGDRRVTAAGDSSEGMDWSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPERNGRITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLSLTSSFTDKGKFLLAARRYRYGTHTEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSCARASRRFASKQISPQVPAGNFEAGDVSYKFNLLKSRGPRRMMCSLKFPVSSMGESSDSKSFDDHKMHRKEHAASAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLSSFGTKLACE* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1567 369 SUPERFAMILY F-box domain 40 83 IPR036047 GO:0005515
Mal4g1567 369 ProSitePatterns Tub family signature 2. 354 369 IPR018066 -
Mal4g1567 369 PANTHER TUBBY-RELATED 23 369 - -
Mal4g1567 369 SUPERFAMILY Tubby C-terminal domain-like 90 369 IPR025659 -
Mal4g1567 369 Pfam F-box domain 45 86 IPR001810 GO:0005515
Mal4g1567 369 PRINTS Tubby superfamily signature 279 296 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 297 313 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 347 369 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 326 345 IPR000007 -
Mal4g1567 369 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Mal4g1567 369 Pfam Tub family 101 364 IPR000007 -
Mal4g1567 369 Gene3D - 33 87 - -
Mal4g1567 369 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 23 369 - -
Mal4g1567 369 ProSitePatterns Tub family signature 1. 297 310 IPR018066 -
Mal4g1567 369 Gene3D Tubby Protein; Chain A 96 369 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1567 Mal-Chr4 25246292 25250463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1567 6 369 TUB Transcription Factor Family AT1G53320 71.968 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal4g1567 Tub 3.8e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1567 K19600 - gmx:100808096 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1567 4 25246292 25250463 Mal4g1567 4 25246292 25250463 ECH