Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1566 ATGAAGCTCTTTCCATCTAATAAATTCTTCAAATGCTTCAACGAGGTTCAATCTCTCAATGCTACCGGCGATGATCGGAGAGGAGGCACCGCGGGCGATGAACCGGAGGGCGGAACTGATTGGTCTACCATGCTTCCGGACCTACTTGCGGAGATAATTAAACGAGTTGACGCTGCCGGGGAACAATGGCCGCACCGCCGAAATGTTGTTGCTTGTGCCGGTGTTTGTAAACGGTGGAGAGATATCACACGTGAGATTGTACAGCCACCTTCTCTTAGCGGCAAAATCACTTTCCCATCTTGTCTTAAACAGCCAGGACCACGCGATCTTCCCAATCACTGTCTTGTAAAGTGGAATAAGAAGACATCCACATTTTACCTCTATCTTGCCCTTACAACATCATTGACAGATAAAGGGAAGTTTCTATTAGCAGCTAGAAGATATAGGTGTTTTACCCATACTGAGTATGTTATATCGCTCGATGCTGATGACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGCTCAGATTTTCTTGAAGCCAACTTCACAATTTATGACAGCCAGACTGGTTCCAAACCATCAAATGGCAGAGCTAGCCAGCGTTTTTCAAGCAAACTGATAACCCCTCAAGTTCCTGCTGGTAACTTCGAAGCAGGAAACGTCTCCTACAAAAAGTTCAACGTTCTGAAAACAAAACGTCCAAGGCGAATGATCTGCTCTCTCAAGTCTCCTACCTCATCATTGTCTGAAAGTTCATATAGCAAGTCTTTCGATGGCCATAATATCCACTTTAAAGAACATGCTACTTCTTCTTCCTACACAATCTTGAAGAACAAAGCTCCAATGTGGAACGAGCAATTGGAGTGCTGGTTCTTGAACTTCCATGAGAGAAAGGATATGACAGTGGCATCAGTGAAAAACTTTCAGCTGGTTGCAACTGTGGACCAAAGCCAACCAGAAGGGAAAGGAGATGAAGAAACAGTTCTCCTCCAGTTCTGTAAACCTTTATCAGCCTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCATTAAACCGGCTTGTCAGTAA 1080 0.4417 MKLFPSNKFFKCFNEVQSLNATGDDRRGGTAGDEPEGGTDWSTMLPDLLAEIIKRVDAAGEQWPHRRNVVACAGVCKRWRDITREIVQPPSLSGKITFPSCLKQPGPRDLPNHCLVKWNKKTSTFYLYLALTTSLTDKGKFLLAARRYRCFTHTEYVISLDADDFSQGSNAYVGKLSSDFLEANFTIYDSQTGSKPSNGRASQRFSSKLITPQVPAGNFEAGNVSYKKFNVLKTKRPRRMICSLKSPTSSLSESSYSKSFDGHNIHFKEHATSSSYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPEGKGDEETVLLQFCKPLSAFQAFAICLTSFGIKPACQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1566 359 Pfam Tub family 102 353 IPR000007 -
Mal4g1566 359 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 28 359 - -
Mal4g1566 359 SUPERFAMILY Tubby C-terminal domain-like 90 359 IPR025659 -
Mal4g1566 359 PANTHER TUBBY-RELATED 28 359 - -
Mal4g1566 359 Gene3D Tubby Protein; Chain A 100 353 IPR025659 -
Mal4g1566 359 Pfam F-box domain 46 87 IPR001810 GO:0005515
Mal4g1566 359 Gene3D - 34 92 - -
Mal4g1566 359 PRINTS Tubby superfamily signature 279 296 IPR000007 -
Mal4g1566 359 PRINTS Tubby superfamily signature 172 196 IPR000007 -
Mal4g1566 359 PRINTS Tubby superfamily signature 337 359 IPR000007 -
Mal4g1566 359 PRINTS Tubby superfamily signature 156 172 IPR000007 -
Mal4g1566 359 PRINTS Tubby superfamily signature 219 246 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1566 Mal-Chr4 25240553 25244062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1566 37 359 TUB Transcription Factor Family AT1G53320 65.306 4.80e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal4g1566 Tub 8.6e-71 CL0395