Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1563 ATGGATGATGGTAGAGGTCCACCCAAAAGGATTAGAGGAAATCACCAATCTCCTAATAGATTGGCAAGTTCTTCAATTTCTCCCACTAATGCAAGATACACTAATGGGGTTGCTATGAGTGATAATGCACCATTGCCATCTCAAATTCGTTTGCTCAACCAAGTAGGACAATTTGCTAATTCATGGAGCAGGTCTGATCCATCTATTATGGTGAATAATGATAATAATCATATACAAGCATCCAATACAAATGAAAGTTCATTAGAGAGTGAAAATGCAAGTTTTCAGAGACACAATCGTTACACAATTGGTGCTACAGTCCCTCTACAACCAGGCTTTCATATTTTGCAATCTCATGGAGTAATGACGGAGAACATTCTCAGACATCAAAGTGCTCATACCTTTGGATCCGCACAAACTAATGAAGAGCAAAATTTGCCTGATGATGTTGCCTTAAATGATGAATTGGAAAATCTGCTTGATGGTGGTATTTTAAGTGATGATGTGCAAAATCTGCTTGATGGTATTTATTTAGATGATGAACTGGAAAATCTAATTGATCCGCATCGAGAAATGCGCTTGGACATTGAAAATATGTCTTATGAGGAAATTATTGAATTGGGTGAGAGGATCGGTAGTGTAAGTAATGGTTTGTCACATGAAACAATTACAACTCAACTGGAGACAAACGTTTACACACCAATCCCTAATAGTATTAATTTGGAGGAGTTACCTTCTAATGAACATGAAATTGATGTTTGCACCATATGCCAGAATGGATTTAGAGATCAGGAGAGGATTGGAATTCTTCTATGCAAGCATGAATATCATAAAAAAAATTGTTCGGTCCAATTCCCTATTTTTCTTGTTTAA 873 0.3654 MDDGRGPPKRIRGNHQSPNRLASSSISPTNARYTNGVAMSDNAPLPSQIRLLNQVGQFANSWSRSDPSIMVNNDNNHIQASNTNESSLESENASFQRHNRYTIGATVPLQPGFHILQSHGVMTENILRHQSAHTFGSAQTNEEQNLPDDVALNDELENLLDGGILSDDVQNLLDGIYLDDELENLIDPHREMRLDIENMSYEEIIELGERIGSVSNGLSHETITTQLETNVYTPIPNSINLEELPSNEHEIDVCTICQNGFRDQERIGILLCKHEYHKKNCSVQFPIFLV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1563 290 SUPERFAMILY RING/U-box 253 278 - -
Mal4g1563 290 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 104 278 - -
Mal4g1563 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 104 278 IPR045191 GO:0061630
Mal4g1563 290 MobiDBLite consensus disorder prediction 16 39 - -
Mal4g1563 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 89 IPR045191 GO:0061630
Mal4g1563 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 285 IPR013083 -
Mal4g1563 290 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 89 - -
Mal4g1563 290 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1563 Mal-Chr4 25198938 25201844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1563 182 285 C3H Transcription Factor Family AT2G15530 42.857 2.27e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1563 - K19041 mtr:MTR_2g076240 174.866