Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1523 ATGGAACATTTATGCGATGACTTCGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGATGACCCTTTTCAGTCTAGTCAGAGGCGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACTAAAAACACATTTAAATCATTTGGCTCTAGCAATGAAAACTTGGTCAGATTGCATCCCTCGTCTTCAAGATTTACACATCCTGAGGAGGACATTAATGTAATTCAACATTCCAATGAGACTGCTCTGGGGTGTTTGCCAGAGAGTTTAACTTGTGAAGACCGGAATGATGAGAATGTAAATGTCAAGCGCATGAAATTTTCTCTGCATGAACTTTCTTGTAGTAGATCTAATTCAGAAGATGTTTTGGGTTCATCTGGAATTCCAAAAGTAGTGATTTCCAACCTGCCTTGTGCTGCCACAGACTGTGATAGTGACTCAATTGCATTTCACACAGTTGAATCATCTAAACATGGTGTGATATCTAGTTGCTATCTATTGAAGCATAACTTGGTACAGAAAATGTATGCTTCTAATGATGATGCAAATGTTACAAATTGTAAATCTAAAACAGCAGATGAGAACATCGCAAAGGAGGTGTCTGCAAGTAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGTAGTAACGAGTCCTTCAATCGCTGTTGTGAAGAAGTCCGAGTTTCCTGTAAAAACTGAGGAAATGCAGGAATGGTTTCAATCTTCTAATATGGATATCTCAAATTCATTGTCAAAGCTAGACCAAGAGGATCCCCGTCCCTTACTGCAGTTTCATATTGTGCAGTTGCTTACGATGTCAGGATGGTCTATTGGGAAGCATCAACGACCTTGTAGGCGGTGGATGGAGTCGGTCTACAAGACACCAAATGGAAAAACTATTCGAGAGTTTACAAAAGTTTGGAAATTATGTGGCCAACTTTTGTCCGTTGAGAAGTGCAATGTAACATATGGAGGCCGTAAGGAATGGACTGGTCTTAGTGATTTCTGGTCAGATCTATCGTGTGCACTGAAAAATGTTGAAAAGTTAAAAACCCAGTCAGAAACCGCTGCTATGTTGGCTTATCAGTGGTGGATTTTGGATCCTTTTGTAGTTGTTATACATTTTGATAAAAAGATCGGTGCTCTGAAAAAGGGAGAGGTTATAAAAGCGTCTTGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATGCTCCAGTTAATTCAGCCTTGGAGGATAGTTCTCGTGCTCTTTCTGATCAAAAGTACAACCAAGCCATTTTCTGCGACTCTTCAACAACCACCGGAACCACAGAAATATCTGCTTTTGTGATAAACAATCACGCTTGTAATCAGATATCTGACGGTAACCATGAAGATATGTATGTCGTAGAGCATAAACCAAACATCATAGAAAACCAATGTAGGGAAATGTCAGTGAGCAAAAGTAGTATGGATCTAGCCTCTTTACCTGCTTGTACATTGGGTAGCACTGTTACCCAATCAAGTGCTTCCTCTTTCAATGTTCTTACAAGCTCTGGAAATTTGGACTTGGAATCTAAAGTGGATGCTGTTCATCAAGCTAAACCTAGAAATTCCAAAAGCTTTGATAAGCACACATCCGAAAATCGGTCCAAATGCAGTGAGGAAGAGGGGAGGAAAATCTCAATGGCTTCTGTATTTGGGAAAGATAGTACATGGTCTTCCTCTAATGGGTTTCTTAAAAAGAAAACGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACTGAGTATGTTATACCATAGTGATATACTGGGATCAACTATTACTGACCAGGTGCAGTCGCTGAATGGTGATGCATGTGGCACTCAGGCTGGGTTGGAAGAAGTTCAGGATTATGTAGCTAACAGTGTGGGCAAAAAAAGGAACCACGGGAAGTTATCAGGCAGTGCAAACCAGCGACATATTAGGAAAACAAACTGCTCCATTACTAAAACAAATAAGTCCAGTAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATACTCAAGAATAAGGACTTCAACACAAAAATAAACCGAGGTAAATCTAGAGCTAAATCCGGCAAATCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGCCGTTGCAGGTTGCTACCAAGGAATCCTTGTAATGGAGGGAAGCACAATATGGATGGGAAGATGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGGAGTCATATCTTTAAATGATATCATTCAATACCGAAACCCTAAAGATAATTCTGTCACCAAGGATGGCAAGATCACCAAAGATGGTATTGTTTGCAAGTGTTGCGGTAAGGTGCTTACATTATCAGAGTTCAAGATCCATGCTGGGTTTACACTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTCACACTTTGCCTCCTTCAAGCTTGGTCGGCTGAATACAAAGCCAGGAAAAGTCAAAATCAAGCTGTGAACATTGTTGATAATGACAGAAACGACGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAACTGATATGTTGTGATAACTGTCCGTCTACTTTTCACCTGGCTTGTTTGTCTGCTCAGGAGATCCCTGATGGCAATTGGTACTGCATAAATTGCACTTGTCGGATTTGTGGAAATTTGGTCACTGATAAAGAGGCTTCAGATACACATGATTCATTACGATGTTCACAATGCGAACATAAATATCATGAGAAGTGCCTAGGAGAAGGAGATAAACAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATATTCTAGTCTCCAATCTCAGGTCGGGCTGGTTAATCAAGTTGCTGATGGCTTCTCATGGACGCTTCTTAGATGCATACACGATGACCAAAAGGTTCATTCTGCTCAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTCGTGTCAATGTTAGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATTCAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTATGGTGTTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGAGTGCATGGGACTACAGTTGCAGAGATGCCTCTAATCGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGCCGACTCCTTGTGAGCTCAATCGAAGAGAAAAGCTTGTGGTATCAGCCATTCCGGATTTGGTGGAGACTTGGACTAAGGGCTTTGGATTCGTACCTGTAG 3366 0.4133 MEHLCDDFEGSNEERQIFTEVFFGDDPFQSSQRRVVSGAINLEHESTKNTFKSFGSSNENLVRLHPSSSRFTHPEEDINVIQHSNETALGCLPESLTCEDRNDENVNVKRMKFSLHELSCSRSNSEDVLGSSGIPKVVISNLPCAATDCDSDSIAFHTVESSKHGVISSCYLLKHNLVQKMYASNDDANVTNCKSKTADENIAKEVSASKVVASPVSQESSANRLVVTSPSIAVVKKSEFPVKTEEMQEWFQSSNMDISNSLSKLDQEDPRPLLQFHIVQLLTMSGWSIGKHQRPCRRWMESVYKTPNGKTIREFTKVWKLCGQLLSVEKCNVTYGGRKEWTGLSDFWSDLSCALKNVEKLKTQSETAAMLAYQWWILDPFVVVIHFDKKIGALKKGEVIKASCSLVSSKGKMAYAPVNSALEDSSRALSDQKYNQAIFCDSSTTTGTTEISAFVINNHACNQISDGNHEDMYVVEHKPNIIENQCREMSVSKSSMDLASLPACTLGSTVTQSSASSFNVLTSSGNLDLESKVDAVHQAKPRNSKSFDKHTSENRSKCSEEEGRKISMASVFGKDSTWSSSNGFLKKKTRRKCKRISQIKLSMLYHSDILGSTITDQVQSLNGDACGTQAGLEEVQDYVANSVGKKRNHGKLSGSANQRHIRKTNCSITKTNKSSRCHIEDDDLLVSAILKNKDFNTKINRGKSRAKSGKSRGLRKLKSHKGRCRLLPRNPCNGGKHNMDGKMYYLGERTLLSWLIENGVISLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCGKVLTLSEFKIHAGFTLSRPCLNLFMKSGEPFTLCLLQAWSAEYKARKSQNQAVNIVDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSAQEIPDGNWYCINCTCRICGNLVTDKEASDTHDSLRCSQCEHKYHEKCLGEGDKQEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVADGFSWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLFNWGSDFARLNFQGFYTMVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVSSIEEKSLWYQPFRIWWRLGLRALDSYL* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1523 1121 PANTHER PHD FINGER PROTEIN 12 2 1098 IPR042163 GO:0003714|GO:0045892
Mal4g1523 1121 PANTHER INCREASED DNA METHYLATION 1 2 1098 - -
Mal4g1523 1121 MobiDBLite consensus disorder prediction 539 563 - -
Mal4g1523 1121 Pfam PHD-finger 859 900 IPR019787 -
Mal4g1523 1121 Pfam Tify domain binding domain 781 831 IPR032308 -
Mal4g1523 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 849 901 IPR013083 -
Mal4g1523 1121 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1007 1103 IPR016181 -
Mal4g1523 1121 SMART PHD_3 858 899 IPR001965 -
Mal4g1523 1121 SMART PHD_3 900 954 IPR001965 -
Mal4g1523 1121 ProSiteProfiles Zinc finger PHD-type profile. 856 901 IPR019787 -
Mal4g1523 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 902 958 IPR013083 -
Mal4g1523 1121 SUPERFAMILY FYVE/PHD zinc finger 845 899 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1523 Mal-Chr4 23699403 23706866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1523 6 403 PHD Transcription Factor Family AT3G14980 33.500 2.44e-47 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal4g1523 TDBD 8.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1523 - - mtr:MTR_2g078040 1952.18