Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1488 ATGATTTCAGAAGAAGCAGTTATTTTCATGGATGATAGTAGAGGTCCACACACAAGGATTAGAGGAAATCACAAATCTTCTAATACTTTGGCTAGTTCTTATATTGCTCATCCTAATGCAAGACACATTGACGGAGTCGCTATGAGAGATGCCACTTCACTACCACTTCGTTTCCCTTCACAAAATCGAGTAGGGCAACATGACAATATATGGAGCAGGTTAGGACGATCTATTATGGGGCATAACCATAGCCATTTGATTAATGCAAACAATATGGGACGATACTTTCAGCCAATACCTTATATACAAGCTCCAAGTGCAAATGGAAGTTCATTACAAAGTTCAAGTATGTGTTTCCAAAGGTATCACCATGACACAAATGGAAATGGAAATCCTAATCCTCCTCGTCTCACCTTACAACAGAATACTTATCATCATCCAATACTTCCTATGCATGAAGTTCCACCAAATCCTCCACGCGGTGTCGTGATCCCTCCACAGGCAGGCCTTCAAATTTTACAACCTCATGGAGTCATTCCTGAGATAACTCTCAGACATCGAAGTGTTAATCCTTCCAGCTTCATCCTCATTGATGATAATGCTTTAATTGATGAAGTTGAAAATCTGGTTGACCAACATCGAGATATGCGCTTGGACATTGATGACATGTCTTATGAGGAACTTCTTGCATTGGGTGAGAGGATTGGCAGTGTAAGCACTGGTTTATCAGAGAAAGCAATCACAAATCAGCTTAAGACAAAATTAAATTCACCATGCCTCAATACTACTAATTTGAAAGAGCTATCTTTTGACGATCCAAAAATTGATGCTTGCATTAGATGCCAGGATGAATTTAGGATTCAAGAGATGATTGGATTTCTTCAATGCGGGCATGAATATCATGTTGACTGCATAACAAAATGGTTGATGGTAAAAAATAATTGCCCTATTTGCAAATCAGAAGCTTTAACTCATGGAAAATAG 984 0.3872 MISEEAVIFMDDSRGPHTRIRGNHKSSNTLASSYIAHPNARHIDGVAMRDATSLPLRFPSQNRVGQHDNIWSRLGRSIMGHNHSHLINANNMGRYFQPIPYIQAPSANGSSLQSSSMCFQRYHHDTNGNGNPNPPRLTLQQNTYHHPILPMHEVPPNPPRGVVIPPQAGLQILQPHGVIPEITLRHRSVNPSSFILIDDNALIDEVENLVDQHRDMRLDIDDMSYEELLALGERIGSVSTGLSEKAITNQLKTKLNSPCLNTTNLKELSFDDPKIDACIRCQDEFRIQEMIGFLQCGHEYHVDCITKWLMVKNNCPICKSEALTHGK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1488 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 323 IPR013083 -
Mal4g1488 327 Pfam RING-H2 zinc finger domain 276 319 IPR024766 GO:0008270
Mal4g1488 327 SUPERFAMILY RING/U-box 277 322 - -
Mal4g1488 327 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 325 - -
Mal4g1488 327 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Mal4g1488 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 325 IPR045191 GO:0061630
Mal4g1488 327 SMART ring_2 278 318 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1488 Mal-Chr4 22798160 22799869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1488 196 323 C3H Transcription Factor Family AT2G15530 48.062 3.08e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1488 K19041 - gmx:100800642 283.108