Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1487 ATGATTTCAGAAGAAGCAGTTATTTTCATGGATGATAGTAGAGGTCCACACACAAGGATTAGAGGAAATCACAAATCTTCTAATACTTTGGCTAGTTCTTATATTGCTCATCCTAATGCAAGACACATTGACGGAGTCGCTATGAGAGATGCCACTTCACTACCACTTCGTTTCCCTTCACAAAATCGAGTAGGGCAACATGACAATATATGGAGCAGGTTAGGACGATCTATTATGGGGCATAACCATAGCCATTTGATTAATGCAAACAATATGGGACGATACTTTCAGCCAATACCTTATATACAAGCTCCAAGTGCAAATGGAAGTTCATTACAAAGTTCAAGTATGTGTTTCCAAAGGTATCACCATGACACAAATGGAAATGGAAATCCTAATCCTCCTCGTCTCACCTTACAACAGAATACTTATCATCATCCAATATTTCCTATGCATGAAGTTCCACCAAATCCTCCACGCGGTGTCGTGATCCCTCCACAGGCAGGCCTTCAAATTTTACAACCTCATGGAGTCATTCCTGAGATAACTCTCAGACATCGAAGTGTTAATCCTTCCAGCTTCATCCTCATTGATGATAATGCTTTAATTGATGAAGTTGAAAATCTGGTTGACCAACATCGAGATATGCGCTTGGACATTGATGACATGTCTTATGAGGAACTTCTTGCATTGGGTGAGAGGATTGGCAGTGTAAGCACTGGTTTATCAGAGAAAGCAATCACAAATCAGCTTAAGACAAAATTATATTCACCATGCCCCAATACTACTAATTTGAAAGAGCTATCTTTTGACGATCCAAAAATTGATGCTTGCATTATATGCCAGGATGAATTTAGGATTCAAGAGATGATTGGATTTCTTCAATGCGGGCATGAATATCATGTTGACTGCATAACAAAATGGTTGATGGTAAAAAATAATTGCCCTATTTGCAAATCAGAAGCTTTAACTCATGGAAAATAG 984 0.3862 MISEEAVIFMDDSRGPHTRIRGNHKSSNTLASSYIAHPNARHIDGVAMRDATSLPLRFPSQNRVGQHDNIWSRLGRSIMGHNHSHLINANNMGRYFQPIPYIQAPSANGSSLQSSSMCFQRYHHDTNGNGNPNPPRLTLQQNTYHHPIFPMHEVPPNPPRGVVIPPQAGLQILQPHGVIPEITLRHRSVNPSSFILIDDNALIDEVENLVDQHRDMRLDIDDMSYEELLALGERIGSVSTGLSEKAITNQLKTKLYSPCPNTTNLKELSFDDPKIDACIICQDEFRIQEMIGFLQCGHEYHVDCITKWLMVKNNCPICKSEALTHGK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1487 327 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Mal4g1487 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 325 IPR045191 GO:0061630
Mal4g1487 327 Pfam Ring finger domain 277 319 IPR001841 -
Mal4g1487 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 323 IPR013083 -
Mal4g1487 327 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 325 - -
Mal4g1487 327 SMART ring_2 278 318 IPR001841 -
Mal4g1487 327 SUPERFAMILY RING/U-box 277 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1487 Mal-Chr4 22787935 22789644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1487 196 323 C3H Transcription Factor Family AT2G15530 49.612 2.18e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1487 K19041 - gmx:100800642 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1487 4 22787935 22789644 Mal4g1487 4 22787935 22789644 ECH