Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1486 ATGGATCAGATGACAGATTCGGATAGAGATCAACAGCGGCAAGGCTATTTTCATTCTGAACCGTGTGTTCTTATGAGAGGCCCCAGCGTCGGACACCCTAATATCCGCTCAGTGGTGACTGCTTCAGGGAACACATCTAATGTTGATTCTCATTATTTACCAGATGCTTATGACAATGCTAGGGTGTACGGGATTACACAATACAACGGCATTCCACCTCAACATAATCTTGAGATGGGCGTTGCAACTGCAGGCAACATATATTATTCAGGCATGAATCCTTCTTCAAGTACCGGTGTTTTCCCTTTGCCTCATAGAGCCTCCGATCAGTTGCCAGGTTCAAGCACATTCGCAATTTCCGGAGTTTCCTTAGATAATTTCGGAAGAAGCAATGGTTTCATGGATGATGCTAGAGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCACCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCACCTAATGCAAGACACGCTGATGGTGTTGCTATGATGGATACTGCGCCATTGCCATTCCGCGTCCCTTCGCTTATTGGAGTAGGACCACATGGCGGTGCGTGGAGTAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCACGGAAATTATTTGGGACAGCACTTTCCGCCAGCGGCTCCTCCATGGTTGGACCAGCAAGTGAATAGCAATAGCAACGATGGCCATACTACAGCCTGGAATCCTTCTGTTCCAATGCCTTATATTCCAGCACCAAATATGAATGGAAGTTCATTAGAAAGTGCAAGTATGGGTTTGCAGAGGTATCACGACACAGCTGGTAACCGAAATGTCCTAAGGTTTCCTCCTCCGCCTCCTCCTGTCAACCAACAGCACCCTAATTATCATCATCCACCACTTCCTATGCAAGGAATCAGAGGTCACAATATCAGCTTTCACCCTCCGGTAACTGCAGCATCATTTAGAGTTCCACCAAACCCTCCACGCGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCTAGGCATATTATCCCAGCACCATCAACAGGCTTCCGGATTTACCAACCTCATAGGCTCATGCCAGAGACAGCTCTCAGACATCGAAGTCTACCTCCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATCTGATTGACCATCACCGAGATATGCGCTTGGACATAGAGGACATGTCGTATGAGGATCTTCTTGCATTGGGCGAGAGGATTGGCAGTGTAAACACTGGTCTATCAGAGGAGACAATTGAAACTCAACTGAAGTCTAAAGTTTATTCAACGAAAGCCACTGGTATTAATCTTGAGGAGGCAGCTTCTGACGATCAGGAAACTGATTCCTGCATAATATGTCAGGAGGAATTTAAGAACCAAGAGAAGATTGGGATTCTTCGATGTGAGCATGAATATCACGCCGACTGCTTAACGAAATGGTTGCTTGTCAAGAATGTCTGCCCAATATGCAAATCAGAAGCTTTGGCTCCGGGAAGCAAAGATGCATAG 1572 0.4587 MDQMTDSDRDQQRQGYFHSEPCVLMRGPSVGHPNIRSVVTASGNTSNVDSHYLPDAYDNARVYGITQYNGIPPQHNLEMGVATAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSNGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNSNSNDGHTTAWNPSVPMPYIPAPNMNGSSLESASMGLQRYHDTAGNRNVLRFPPPPPPVNQQHPNYHHPPLPMQGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPQTGFEAGPRHIIPAPSTGFRIYQPHRLMPETALRHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIETQLKSKVYSTKATGINLEEAASDDQETDSCIICQEEFKNQEKIGILRCEHEYHADCLTKWLLVKNVCPICKSEALAPGSKDA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1486 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 126 519 - -
Mal4g1486 523 Pfam Ring finger domain 469 512 IPR001841 -
Mal4g1486 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Mal4g1486 523 SUPERFAMILY RING/U-box 465 515 - -
Mal4g1486 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 516 IPR013083 -
Mal4g1486 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 519 IPR045191 GO:0061630
Mal4g1486 523 SMART ring_2 471 511 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1486 Mal-Chr4 22756925 22759457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1486 388 516 C3H Transcription Factor Family AT2G15530 45.926 1.60e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1486 K19041 - gmx:100800642 718.383