Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1475 ATGGCTCCAAGAGACAACAGAGTCACCACCACCACCACCGGGCCCAACCTAACAGTTCAGGCCCATGCCCAGGCCCAGAGAGAGATTCGTTACAGAGGCGTTAGAAAACGTCCATGGGGTCGTTACGCTGCTGAGATCCGTGACCCGGGTAAAAAAACACGCGTCTGGCTCGGAACATTTGACACCGCTGAAGAAGCGGCGCGTGCTTACGACACAGCGGCACGTGAGTTTCGCGGAACCAAAGCGAAAACTAATTTTCCAACGCCGTTGGAGATTATCATCAACCGTAGCCCAAGTCAGTGCAGCACTCTTGAATCACCATCACCACCGCCGCTTGATTTAACTCTTACCCCATTCTCCTCCTCCGCCGGTGGTGTTTCCAGCGGTGTTACCATGGCTTTTCCGGTGGCGCGTCCTGTTTTGTTTTTTGACGCTTTCGCACGCGCTGAAACTGCGTTAAGCGTTGGTCGTCGTGAGATTTGTGGATTTGAACGTCCTATGGCTGATTTTCGACGCGCCGCCGTGCAGAGTGATTCTGGTTCATCTTCTTCTGTTGTTGATTATGAAGGTGTGCCACGTCAGAGAGTGTTGGATCTTGATCTTAATGTTCCTCCTCCACCTGAAGTTGCTTGA 633 0.5245 MAPRDNRVTTTTTGPNLTVQAHAQAQREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGTKAKTNFPTPLEIIINRSPSQCSTLESPSPPPLDLTLTPFSSSAGGVSSGVTMAFPVARPVLFFDAFARAETALSVGRREICGFERPMADFRRAAVQSDSGSSSSVVDYEGVPRQRVLDLDLNVPPPPEVA* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1475 210 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Mal4g1475 210 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Mal4g1475 210 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mal4g1475 210 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Mal4g1475 210 PANTHER ERF FAMILY PROTEIN 21 193 - -
Mal4g1475 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 193 - -
Mal4g1475 210 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Mal4g1475 210 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mal4g1475 210 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mal4g1475 210 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1475 Mal-Chr4 22567892 22568524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1475 15 144 AP2-EREBP Transcription Factor Family AT3G15210 60.135 5.82e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal4g1475 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1475 K09286 - gmx:100813652 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2998 7 93313310 93314008 Mal4g1475 4 22567892 22568524 ECH
Mal4g1475 4 22567892 22568524 Mal4g4045 4 116105125 116105748 ECH
Mal4g1475 4 22567892 22568524 Mal4g1475 4 22567892 22568524 ECH