LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g1413	ATGAGAAAGAAACATTGGTTTTTATCGAATGTTGTTGTTGGTCTGTCCATCTCCATCCTCCTGATCATGTCCAAACTGTGTTTGTGTGATATTCAATATATTGGCACTATCTCACCTGGGATGGAAGGTTCTCAAACGAATTATATTGACAAAGACTTCAAGTTCCTCCTCTCAAACAATAGAAATTTTGCATTTGGTTTTGTGACCGCCGTCAATGACACCACCAAGTTTCTATTAGCAATCGTCCACGCGGCTAGCTCAACCGTGCTTTGGACTGCTAATAGAGCATTACCTGTTTCCAATTATGATAATTTCGTGTTTGATAAAAACGGAAATGCTTTCTTACAGAAAGATGGAACTGTGATATGGTCTACAAACACATCTAGCAAAGGTGTTTCTTCAATGGAATTGCTAGACACTGGAAATTTGGTTTTGCTTGGTAAAGACAATAGTACAGTAATTTGGCAAAGTTTTAGTTATCCAACTGATACTTTGATGCCTTCACAGGATTTCAAAGAGGGAATGAAACTTATCAGTGAACCTAGTACAAATAACTTGACCTATGTTCTTGAGATTAAATCTGGTAATGTTATTCTTTCAGCTGGTTTCAAAATTCCACAGACTTGTTGGACTATGCGGAAGGATATCCGTAAAATTGTTAACAAGAACGGCGATGTTGTGGCTTTTGCAAATCTCGGTGGTAATTCTTGGAGGTTCTATGATAACAGTAAGTCTTTGTTATGGCAATTCATTTTCTCTGATGATACAAGCATAAATGCAAGTTGGATTGCAGTTTTGGGAAAAGACGGTGCCATTACTTTCTCTAATCTCAACGGTGGTGGATCATATGGTGATGCTTCACTAAGAATACCAAGAGATCCTTGTGGTACACCAGAACCTTGTGATCCCTACAGCATATGCGCAAACAACCGTAGGTGTAGCTGTCCTCTTGTTCTTCTTCCTAGTTGTAAACCAGGGAACTGTTTCTTGTTGGACAGTGTTGGAAGTTTTCAGAAATCTGATGATGCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCAAGTGATGGAAATGGAAGCAGAAATAAGCACATCATAGTTGTTCTGGTCATTGTCATATCATTAACTTTGCTTGTTCTCCTCTTTGTGGGGGTTCTTCTATACTACAGAAAAAAGAAAAAGTTATCGCGAGAGAATTCGGAAGAAGACAAATTCTTGGAGAGTTTAACTGGCATGCCAATCCGTTTCCGCTATAAAGATCTTGAAGTTGCAACTAATAACTTCTCTGTGAAGCTAGGTCAAGGAGGTTTTGGATCAGTTTATAAAGGAGTTCTACCTGATGGGACTGAATTAGCTGTGAAGAAGCTAGAAGGTATTGGTCAAGGGAAGAAAGAGTTCAGAGCTGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTGGTAAGGCTTAAAGGATTTTGTGCAGATGGAACTCATAGACTTCTAGTTTATGAGTATATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAAAAAAGTGAATTTCTTTTGGATTGGGATACAAGGTTTAATATAGCATTAGGAACAGCAAAAGGACTTGCTTATCTACATCAAGAGTGTGACTCAAAGATTGTTCATTGTGACATCAAACCTGAAAATGTACTTTTAGATGAACATTTCATTGCCAAAGTTTCAGATTTTGGTTTAGCCAAGCTTATGAATAGAGAACAAAGTCATGTTTTTACAACACTAAGAGGAACTTGTGGCTACCTTGCACCTGAGTGGATAACAAACTATGCCATATCAGAGAAAAGTGATGTATACAGCTATGGAATGGTGTTGCTAGAGATAATTGGTGGAAGGAAGAACTATGATCTTGTTGGAACACTAGCGTGA	1905	0.3785	MRKKHWFLSNVVVGLSISILLIMSKLCLCDIQYIGTISPGMEGSQTNYIDKDFKFLLSNNRNFAFGFVTAVNDTTKFLLAIVHAASSTVLWTANRALPVSNYDNFVFDKNGNAFLQKDGTVIWSTNTSSKGVSSMELLDTGNLVLLGKDNSTVIWQSFSYPTDTLMPSQDFKEGMKLISEPSTNNLTYVLEIKSGNVILSAGFKIPQTCWTMRKDIRKIVNKNGDVVAFANLGGNSWRFYDNSKSLLWQFIFSDDTSINASWIAVLGKDGAITFSNLNGGGSYGDASLRIPRDPCGTPEPCDPYSICANNRRCSCPLVLLPSCKPGNCFLLDSVGSFQKSDDADSGYVSYIKVSSDGNGSRNKHIIVVLVIVISLTLLVLLFVGVLLYYRKKKKLSRENSEEDKFLESLTGMPIRFRYKDLEVATNNFSVKLGQGGFGSVYKGVLPDGTELAVKKLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKSEFLLDWDTRFNIALGTAKGLAYLHQECDSKIVHCDIKPENVLLDEHFIAKVSDFGLAKLMNREQSHVFTTLRGTCGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDLVGTLA*	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g1413	634	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	13	326	-	-
	Mal4g1413	634	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	325	629	-	-
	Mal4g1413	634	SMART	serkin_6	426	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal4g1413	634	SUPERFAMILY	Protein kinase-like (PK-like)	407	629	IPR011009	-
	Mal4g1413	634	Gene3D	-	47	160	IPR036426	-
	Mal4g1413	634	Pfam	Protein kinase domain	430	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal4g1413	634	Pfam	D-mannose binding lectin	88	171	IPR001480	-
	Mal4g1413	634	CDD	B_lectin	47	161	IPR001480	-
	Mal4g1413	634	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	13	326	-	-
	Mal4g1413	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	547	559	IPR008271	GO:0004672\|GO:0006468
	Mal4g1413	634	Gene3D	Transferase(Phosphotransferase) domain 1	501	632	-	-
	Mal4g1413	634	Gene3D	Phosphorylase Kinase; domain 1	389	500	-	-
	Mal4g1413	634	SUPERFAMILY	alpha-D-mannose-specific plant lectins	87	163	IPR036426	-
	Mal4g1413	634	SMART	blect_4	47	161	IPR001480	-
	Mal4g1413	634	ProSiteProfiles	Protein kinase domain profile.	426	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal4g1413	634	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	325	629	-	-
	Mal4g1413	634	ProSitePatterns	Protein kinases ATP-binding region signature.	432	455	IPR017441	GO:0005524
	Mal4g1413	634	ProSiteProfiles	Bulb-type lectin domain profile.	41	158	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g1413	Mal-Chr4	20891057	20893144	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g1413	373	626	Receptor kinase-like Gene Family	AT5G20050	50.000	8.41e-84	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Mal4g1413		Pkinase	1.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g1413	-		-	mtr:MTR_2g080100	873.233