Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1339 ATGGATGAAATTGATGTTCCTTCACATTTTCTCTGCCCTATTTCCCTACAACTTATGAAAGATCCTGTTACTCTTTCCACAGGAATTACCTACGACAGAGAAAACATAGAAAAATGGTTATTTTCATTCCAAAACAATACTTGTCCTGTTACAAAACAAACCTTATTAGAAACTGATCTTAATAATCTCACACCAAATCACACTTTACGTCGTTTGATTCAATCTTGGTGCACACTTAATGCTTCATTTGGTGTCGAACGCATTCCGACACCAAAATCACCAATTGACAGAACACAGATTCTTAAACTCCTCAATGAAGCAAAGAAATTCCCAGAAAAACAACTCAATTGTCTCTTAAAGCTTCGTTCTATCGTCTTCGAAAGCGAAAGGAACAAAAAATGTTTGGAATCTGCAGGAGCTATAGAGTTTTTAGCTTCAACCATGAAGAACAATTCAAATTCAAGTTCTTTGAGTGAAGCAGCTATTGAAATTCTGTTTCATCTAAACCCTTCTGAAGAACACATTAAGAATCTGATAAACAATGAAAGCATTCAATTCATTGAGTCATTGTTTCATGTTTTGAAGCTTGGAAGCTACCAATCTAGAGGTTATGCAACAATGCTATTGAAATCGGCGTTTGAAGTATCCGATCCGATTCAATTAATCAGCGTAAAAAAAGCGGTTTTTGAGGAAATAATGAGAGTGCTAGTTGATAAGATTTCACAACAAGCTTCAAAAGCTGCATTGAAGCTACTTGTGGAGCTTTTACCATGGGGAAGAAACCGAATTAAAGCGGTTGAAGGCGGCGCGGTTTTAGTCCTCATCGAGCTTCTTTTCGATGTTTCGGAAAGAAGGGTTTGTGAATTGATGTTAATAGGTTTGGATCAACTTTGTGGTTGTGCAGAAGGGAGAGCAGAGTTGTTGAATCATGGAGCAGGATTGGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGTGTTAGAATTTTGAGTTCAATTTGTAGGTATTCTGCAAATTCTAGAATTTTACATGAAATGTTGCATGTTGGAGCTGTTTCAAAGTTGTGTTTGGTGCTTCAAGTTGATAGTAATTTTAAGACTAAAGAGAGGGCTAAGGAGATACTTAAATTGCATTCTACTGTTTGGAAGAATTCAACATGTATTCCTGTACCTTTGTTATCTTCCTATCCATGA 1212 0.3647 MDEIDVPSHFLCPISLQLMKDPVTLSTGITYDRENIEKWLFSFQNNTCPVTKQTLLETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLLNEAKKFPEKQLNCLLKLRSIVFESERNKKCLESAGAIEFLASTMKNNSNSSSLSEAAIEILFHLNPSEEHIKNLINNESIQFIESLFHVLKLGSYQSRGYATMLLKSAFEVSDPIQLISVKKAVFEEIMRVLVDKISQQASKAALKLLVELLPWGRNRIKAVEGGAVLVLIELLFDVSERRVCELMLIGLDQLCGCAEGRAELLNHGAGLAIVSKKILRVSHVASDRGVRILSSICRYSANSRILHEMLHVGAVSKLCLVLQVDSNFKTKERAKEILKLHSTVWKNSTCIPVPLLSSYP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1339 403 SUPERFAMILY RING/U-box 3 80 - -
Mal4g1339 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Mal4g1339 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Mal4g1339 403 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Mal4g1339 403 Gene3D - 97 392 IPR011989 -
Mal4g1339 403 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mal4g1339 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Mal4g1339 403 SUPERFAMILY ARM repeat 100 382 IPR016024 -
Mal4g1339 403 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Mal4g1339 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1339 Mal-Chr4 19552487 19553698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1339 2 403 U-box Gene Family AT2G35930 55.419 3.50e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1339 - - gmx:100778012 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1339 4 19552487 19553698 Mal4g1339 4 19552487 19553698 ECH
Mal4g1339 4 19552487 19553698 Mal7g1793 7 62541556 62542797 PCT