Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1309 ATGGAAATGGAGTGGACTAGAGGCAACATCATCGGACATGGCTCATCCGCCACCGTCTACCTCGCCACTTCTCATCACTCCACCGATGTCTCCGCTGTGAAATCTGCGGAGACATCGCAATCAAACTCAAAACAACTACAGAGAGAACAGAGAATTCTTTCTTCCCTGTCCTCTCCTTACATAGTTACCTACAAAGGTTGCAATTTTACAAAGGAGAATAATAAGCATTTGTTCAACCTCTTCATGGAGTATATGCCATTTGGAAATCTCTCTCAGGCGACTCGCCGGAACGGTGGCCGGCTCAACGAGCCGGCGATAGCACACTACACAAAACAAATTGTGGAAGGACTTGAGTACTTGCATTCAAAAGGTGTTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTATGTGAAAAAGGAGTCAAAATTGGAGACTTTGGTTGTGCAAAAATGGTTGATGAAATTGTGCCGGTAGCCGGAACACCGATGTATATGGCACCGGAGGTGGCGCGCTGCGAAGAACAAGGTTACCCTTGTGATGTTTGGTCACTTGGGTGCACTGTTGTTGAAATGGCAACTGGGTTTTCACCTTGGTCCAATGTAGAAGACTCTGTTAATGTTCTGTATCGTCTTGCATATTCTGATGAGGTTCCTATGATTCCTTGTTTTTTGTCTGAACAAGCAAAGGATTTCTTGGAGAAGTGCTTTAGAAGGGATTCTAAGGAGAGGTGGAGTTGTAGTCAATTGTTGAATCATCCATTTCTTGTGGAATTTGATTCTAGTGTTGAGAAAATTCAAGAATTTGATTCATGTTCACCAACTAGTATTCTTGAACAACAATTTTGGAATTGTGATGAAGAGTCAGAAAGTTTCTTTTTTGGTGATTTGGGTAAGACTAGTTTTATGAATTGTCCTGTTGGTAGGATAAAAAAGCTAGCTTTGTGTTCAAGGGATCCATGTTGGAAATGGGGTGATGAGAATTGGATTGTAACTAGAGGGAATGATGCAGATGCAGAGTCTTCAATTAGTGAGAAAAGTGATTTTAGTGGTAGAATTAGTGGTGATTATTTTGGTGATGATTATTATGATTGTAAGATTAGGGATGTTAGTTTTGTAGTTAATAGTCTTAATTTTGAGAGAGGCATTGGAATGTTGATGCCCAATTCAACATTAGATTTTTTATAA 1188 0.4015 MEMEWTRGNIIGHGSSATVYLATSHHSTDVSAVKSAETSQSNSKQLQREQRILSSLSSPYIVTYKGCNFTKENNKHLFNLFMEYMPFGNLSQATRRNGGRLNEPAIAHYTKQIVEGLEYLHSKGVVHCDIKGSNILVCEKGVKIGDFGCAKMVDEIVPVAGTPMYMAPEVARCEEQGYPCDVWSLGCTVVEMATGFSPWSNVEDSVNVLYRLAYSDEVPMIPCFLSEQAKDFLEKCFRRDSKERWSCSQLLNHPFLVEFDSSVEKIQEFDSCSPTSILEQQFWNCDEESESFFFGDLGKTSFMNCPVGRIKKLALCSRDPCWKWGDENWIVTRGNDADAESSISEKSDFSGRISGDYFGDDYYDCKIRDVSFVVNSLNFERGIGMLMPNSTLDFL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1309 395 SUPERFAMILY Protein kinase-like (PK-like) 5 278 IPR011009 -
Mal4g1309 395 CDD STKc_MAPKKK 4 256 - -
Mal4g1309 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Mal4g1309 395 Pfam Protein kinase domain 7 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g1309 395 Gene3D Transferase(Phosphotransferase) domain 1 2 293 - -
Mal4g1309 395 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Mal4g1309 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 356 - -
Mal4g1309 395 ProSiteProfiles Protein kinase domain profile. 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g1309 395 PANTHER MAP KINASE KINASE KINASE 3 356 - -
Mal4g1309 395 SMART serkin_6 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1309 Mal-Chr4 19027328 19028515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1309 3 284 MAP Kinase Kinase Kinase AT2G32510 53.448 9.56e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mal4g1309 Pkinase 5.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1309 K20716 - pvu:PHAVU_005G115900g 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1309 4 19027328 19028515 Mal4g1309 4 19027328 19028515 ECH
Mal4g1309 4 19027328 19028515 Mal5g5514 5 129777134 129778464 ECH
Mal4g1309 4 19027328 19028515 Mal7g1736 7 59695413 59696610 PCT