Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1288 ATGGAGGTGTTAGGAGTAAAGGGGTTTTTCCTCTTATTTTTCTGTTTGTGGATTCCAAAGGAGATTTTGGGAAGCATTGGAAACTCTACTGTGTCTTCTAGACCAACTGTTTTGAGAATTGGAGCACTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTCAAGCAGGAATCAAAACTGCAATTGAAGATGTTAATGCTAATAAGACCATTCTTCCTGGTATTAAACTGGATGTTATTTTCCATGATACAAATTGCAGTGGATTTATTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTTGTAGCTGCTATTGGTCCACAGTCCTCAGGAATAGCTCATATCATATCTCATGTAGCTAATGAACTCCATGTACCTCTTCTTTCATTTGGAGCAACAGACCCTACTCTATCTTCTCTGCAGTTTCCGTATTTCGTCCGAACCACGCATAGTGACTATTTTCAGATGTATGCAATTGCGGACCTTGTTGATTTTTATAGATGGAGGCAAGTAATTGCGATTTTTGTAGACGATGATTATGGAAGAAACGGCGTTTCAATACTCGGAGATGCGCTAGCAAAGAAACGTGGCAAGATCTCTTACAAGGCTGCATTATCTCCTGGAGCCACCAAGAATGATATCAATGATTTGTTAAATAGTGTGAACTTAATGGAATCAAGAGTCTTTGTTGTTCATGTTAATCCTGATCATGGTTTGAATATTTTTTCTATTGCTAAGAACCTTGGAATGATGACTGGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCAATGGAGCCAGTTGCTACTGATACATTGAAACTCCTTCAAGGTGTTGTAGCTTTGAGGCATCACACTCCTGATACTAATCTCAAAAAGAGTTTTTTCTCTAGGTTGAAGAACATGAGTGGCACAGAAACTACAAGCTTCAATTCTTATGCTTTATATGCGTATGATTCTGTTTGGTTAGCAGCCTATGCTCTTGATACTTTTCTCAAAGAAGGTGGAAACATATCTTTCTCATCTGACCCTAAGTTGATTGACACAAAAGGAAGCATGTTGCATTTGTCTTCGCTTCGCGTTTTTGAAGGTGGTCTGTCGTTTCTCCCTACACTTTTGAGAATGAACTTCACCGGGTTGAGTGGTCAGATTCAGTTCAATACGGACAAGAAGAATCTAATTCGTCCATCATATGATATCCTTAACATCGGTGAATCTGGTTCCCGGAGAGTCGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTCAGCTCCTGAAATTTTGTACAAGAGACCACCTAACGCTTCAAGCAGTCAAAAACTGTTCAGTGTTTTGTGGCCTGGAGATACTATAGCTACACCAAGAGGATGGGTTTTCCCTAACAATGGAAAGCCACTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGAGTTTGTTTCTAAGGACAAGAATCCACCAGGAGTTAGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCGCGACAGTATATATTATATGGAGATGGTAAGAGAAATCCCGACTACAGCGAGCTTGTCAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGGTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTGGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCTTGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGCGCATTTTTCCTTTTCGTCGGAGCTGTTGTTTGGATTCTTGAGCACAGGCACAATCCGGAGTTCCGAGGTCCACCCAGGAAGCAAATAATGACAATATTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAAAACACTGTGAGTGGTCTTGGGCGTTTCGTGCTAATCATATGGCTTTTTGTGGTTTTAATTATCAATTCAAGCTACACAGCAAGTTTAACATCCATCCTCACAGTGCAGCAACTATCATCACAAATTGAAGGAATTGACAGCTTGATATCAGGTACTCAACCAATTGGAATTCAAGATGGGTCATTTGCAAGAAGGTATCTGATAGATGAACTCAATATACAACCATCTAGGATAATTTCATTGAGAGATCCAAAGGTGTATATGGATGCCCTTATGCGTGGACCGAAAGGAGGAGGTGTTGTGGCTATTGTAGATGAGCTTCCTTATATTGAACTCTTTATGTCTAGTACTAACTGCAAGTTCAGAACTGTTGGGCAAGTGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCTCCCCTTGCGGTTGATATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTTCAAGACATGATTGTGCTGCAAAAGTCGACGACACTGATTCAAATGAACTATCTCTTAAAAGCTTCTGGGGTCTCTTTCTTATATGCGGCATTGCATGTCTCCTTGCTTTGATTGCATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGTGAGTGAGCAGGAAGTTGACCCGGAAAATTCATCGCACAGGCCTAAAAGAACTTTTCGATCTTCGAGAAGCTTCAAAGACTTGATTGAATTTGTGGATACGAGAGAAAGAGAAATCAAGGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGTGACCAGAGCTTAGATGATCAATTTAGTTCACCTACCTAA 2796 0.4063 MEVLGVKGFFLLFFCLWIPKEILGSIGNSTVSSRPTVLRIGALFTVDSVIGRSAQAGIKTAIEDVNANKTILPGIKLDVIFHDTNCSGFIGTVEALQLMENEVVAAIGPQSSGIAHIISHVANELHVPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADLVDFYRWRQVIAIFVDDDYGRNGVSILGDALAKKRGKISYKAALSPGATKNDINDLLNSVNLMESRVFVVHVNPDHGLNIFSIAKNLGMMTGGYVWIATDWLPSKLDSMEPVATDTLKLLQGVVALRHHTPDTNLKKSFFSRLKNMSGTETTSFNSYALYAYDSVWLAAYALDTFLKEGGNISFSSDPKLIDTKGSMLHLSSLRVFEGGLSFLPTLLRMNFTGLSGQIQFNTDKKNLIRPSYDILNIGESGSRRVGYWSNYSGLSVSAPEILYKRPPNASSSQKLFSVLWPGDTIATPRGWVFPNNGKPLRIAVPHRISYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRQYILYGDGKRNPDYSELVNQVALNNFDAAVGDVTIVPNRTRVLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPRKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIQPSRIISLRDPKVYMDALMRGPKGGGVVAIVDELPYIELFMSSTNCKFRTVGQVFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLSRHDCAAKVDDTDSNELSLKSFWGLFLICGIACLLALIAFFVRVFCQYMKFIPVSEQEVDPENSSHRPKRTFRSSRSFKDLIEFVDTREREIKEILRQKSKKRRRDQSLDDQFSSPT* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1288 931 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Mal4g1288 931 Gene3D - 58 402 - -
Mal4g1288 931 Gene3D - 585 704 - -
Mal4g1288 931 CDD PBP1_GABAb_receptor_plant 39 431 IPR044440 -
Mal4g1288 931 Pfam Bacterial extracellular solute-binding proteins, family 3 530 815 IPR001638 -
Mal4g1288 931 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Mal4g1288 931 PANTHER GLUTAMATE RECEPTOR 3.4 26 913 - -
Mal4g1288 931 SMART GluR_14 474 816 IPR001320 GO:0015276|GO:0016020
Mal4g1288 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Mal4g1288 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Mal4g1288 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 111 139 - -
Mal4g1288 931 MobiDBLite consensus disorder prediction 912 931 - -
Mal4g1288 931 Gene3D - 748 776 - -
Mal4g1288 931 PIRSF IGluLR_plant 4 930 IPR017103 -
Mal4g1288 931 SUPERFAMILY Periplasmic binding protein-like I 33 465 IPR028082 -
Mal4g1288 931 Gene3D - 468 584 - -
Mal4g1288 931 Pfam Receptor family ligand binding region 55 410 IPR001828 -
Mal4g1288 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 913 - -
Mal4g1288 931 Gene3D - 153 427 - -
Mal4g1288 931 Gene3D - 777 813 - -
Mal4g1288 931 CDD GluR_Plant 471 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1288 Mal-Chr4 18618296 18622778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1288 34 785 Ion Channels AT1G05200 69.089 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1288 K05387 - gmx:100799912 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1288 4 18618296 18622778 Mal4g1288 4 18618296 18622778 ECH