Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1261 ATGGATATGGATTCCACAGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATATATCTATTGCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTCCTTCTGCTTTCACCTGGATGCCTCACTCTCAAACTCAAACTCAGATCATCAATCCTCCTTCCTCCCATGTGAGCTTGGAAATGGAATACTCACTAGATTCAGCTGTATTGGAAAGTGTCCCTTCAAAGCGCATGGAAATAGAATACTCATTGGATTCAACTATATTGGAAAACGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAAGCAGGTCGTGAGAAAGTGCGAAGAGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCCTAGAGCCTGATACACTGCCCAAAACAGACAAGGTTAGCCTATTAAATGATGCAGTTCGAGTGGTGACCCAATTAAGAAATGAAGCGGAGAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTCAAATTAACAAGTGTACAGTCCAGCTTCCTCTCTAATGCCATGGCTGCTAAAGGACAAACTGCTGCTAACCACAAGCTGATGCCATTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTCGATACCTCACAGGATCATCTGCTTCGTCCTCCAGTTGCTTAA 783 0.4253 MDMDSTGGSSIWLYDYGYDISIAAADFMASDSSAAPSAFTWMPHSQTQTQIINPPSSHVSLEMEYSLDSAVLESVPSKRMEIEYSLDSTILENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQTAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1261 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Mal4g1261 260 Gene3D - 107 184 IPR036638 GO:0046983
Mal4g1261 260 PANTHER BHLH TRANSCRIPTION FACTOR 1 260 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Mal4g1261 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 171 IPR036638 GO:0046983
Mal4g1261 260 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 260 - -
Mal4g1261 260 CDD bHLH_AtILR3_like 109 184 - -
Mal4g1261 260 Pfam Helix-loop-helix DNA-binding domain 108 155 IPR011598 GO:0046983
Mal4g1261 260 SMART finulus 110 161 IPR011598 GO:0046983
Mal4g1261 260 Coils Coil 145 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1261 Mal-Chr4 18246418 18249009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1261 92 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.322 2.15e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal4g1261 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1261 - - mtr:MTR_2g089000 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1261 4 18246418 18249009 Mal4g1261 4 18246418 18249009 ECH