Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1244 ATGTTGGCGAAGGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAGAGAATATAATGCCCAACTTGAAACCGGCAATGATGCGGATAAGCCTGTTCGAAAAGTTGCTGCCAAAGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCGGAAAACTCACGGTGTAATTATAGAGGTGTGAGACAAAGGACTTGGGGGAAATGGGTTGCTGAAATCCGTGAGCCGAATCGAGGGAGTAGGCTATGGCTAGGTACTTTTGCCACTGCCATTGGTGCTGCTCTTGCTTATGATGAGGCAGCCAGGGCAATGTATGGTTCTCGTGCCCGTCTCAACTTTCCTAATGTTTCAGTTGGTAGATTCTCTGAGGAATCTTCAAATGATTCTCTAGATGCAAATCACTTCGGTTCCTCGTTGGGAGTATCAACAAATACCGAGTCCATGATAATACCAGATAACTCAGGCATAGGAGTAGACGACGGTAATAATATGGAACCACCGATTTCCTTATGCTTAAGTGTAAAGCAGGAGAATGAGAAAGGTGAGCCGAGGATAAATTAA 582 0.4536 MLAKACEKGDGSKSLGKILARWREYNAQLETGNDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFATAIGAALAYDEAARAMYGSRARLNFPNVSVGRFSEESSNDSLDANHFGSSLGVSTNTESMIIPDNSGIGVDDGNNMEPPISLCLSVKQENEKGEPRIN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1244 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 142 - -
Mal4g1244 193 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Mal4g1244 193 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Mal4g1244 193 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Mal4g1244 193 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Mal4g1244 193 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Mal4g1244 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 142 - -
Mal4g1244 193 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Mal4g1244 193 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Mal4g1244 193 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1244 Mal-Chr4 17908316 17908897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1244 8 125 AP2-EREBP Transcription Factor Family AT2G40350 59.836 6.56e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal4g1244 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1244 - - cam:101488673 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1244 4 17908316 17908897 Mal7g1600 7 52556620 52557207 PCT