Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1227 ATGGGAAGATCACCTTGTTGTGATAAAAGTGGACTCAAAAAAGGTCCATGGACACAAGAAGAAGATCTTATGCTTATCAACTACATTAACACTCATGGACCTGGAAATTGGCGCAACCTCCCTAAAAATGCTGGTCTTCAAAGGTGTGGCAAGAGTTGTCGCCTTCGATGGACAAACTATTTGAGACCTGACATCAAGAGAGGAAGATTTTCCTTTGAAGAAGAAGAGAGCATCATTCAGCTCCATAGTGTCTTGGGAAACAAGTGGTCTGCTATAGCGGCTAGATTACCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAACACACACATTAGAAAAAGACTACTTCGAAGTGGAATTGATCCTGTTACTCATACTCCGCGTCTCGATCATCTATTTGACATGTCCTCCATTAATATTCTCAGATCAGCTTTATTAGGAGGAACCAACCAAATGAACCCATCATTTCTGAACTTATTAGGTGGTGCTCAAGCTTTGATGAATCCAGAATTGTTAAAGCTAGCTGCAACTGCCTCATTATTAAACAACAACATAAATTTGGTTTCACAGAATCAACAACAAATCAATAATGTTGCTAATGCTGCTAATTGTACTCAACAACAAGTACAAAATCAAGTTTACCATCAAGATCAATTTCAAACACAAACTCAAAATCACAATGTGAATAATGGCTTATTAGGAAACATGAGTTGTTCAAGTTCAGCTGAAAATACAAATCCTTGTTATTTTGGAGAGGATTTGATTTCTAAACAATATTCAGAATTGTTTCATTGCCTAAATAATGATGGAAACAAAAATAGTATGGGATGTGAATCGGTTATATCGACTACGCCTTTATCGACGACACCAACACCATCATCAACATATGTGAATAGCTGCACAGAGGAAGAGAGGGATACATATTGCAGTGACATATTCAAGTTCGAAATTCCAGAGAGTACTTTGGACATTAATGATTTCTTGTAA 990 0.3717 MGRSPCCDKSGLKKGPWTQEEDLMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEESIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRSGIDPVTHTPRLDHLFDMSSINILRSALLGGTNQMNPSFLNLLGGAQALMNPELLKLAATASLLNNNINLVSQNQQQINNVANAANCTQQQVQNQVYHQDQFQTQTQNHNVNNGLLGNMSCSSSAENTNPCYFGEDLISKQYSELFHCLNNDGNKNSMGCESVISTTPLSTTPTPSSTYVNSCTEEERDTYCSDIFKFEIPESTLDINDFL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1227 329 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mal4g1227 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal4g1227 329 CDD SANT 69 112 IPR001005 -
Mal4g1227 329 Gene3D - 13 66 - -
Mal4g1227 329 CDD SANT 16 61 IPR001005 -
Mal4g1227 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal4g1227 329 PANTHER TRANSCRIPTION FACTOR MYB41 1 323 - -
Mal4g1227 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal4g1227 329 SMART sant 13 63 IPR001005 -
Mal4g1227 329 SMART sant 66 114 IPR001005 -
Mal4g1227 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal4g1227 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal4g1227 329 Gene3D - 69 116 - -
Mal4g1227 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Mal4g1227 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1227 Mal-Chr4 17251839 17253362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1227 1 329 MYB Transcription Factor Family AT4G21440 46.684 4.44e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal4g1227 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1227 K09422 - gmx:100812189 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1227 4 17251839 17253362 Mal4g1227 4 17251839 17253362 ECH