Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1178 ATGGTAGTAATCGAACATCAAGAGACTGAGAAGGATCGAAACGCGATTCCCTCCACCGCCGCCGCTACAACCAACGACGCTTCCGACGGCTTCGAAACCGCCAGTGACACCGATCTCGGCAGCGATGTCGACGCCAATGACGCCGGCGGTGCAATCAAACACGAAGAACAAGATAATCTTCAGCAACATCACCAACAAACAAAGCTAGAGCAAGACCAGGAGCAGGGTGATTCTCAGAGAATCATTTCCTCTGATGATGCTTCGATCAATGAGGAGGAACTGAAACAGAAAGCATTGGTTGAAGCAAACGAAGCAAAGGTAGAAGGGAACAAACTCTTTGTAGATGCGAAGTATGAGGAGGCATTAACACAATATGAACTTGCTTTACAAGTCGTACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGTGTGTGCTTTCTGAAAATGGGAAAATATGAAAACACGGTTAAAGAATGCAGCAAAGCATTAGAATTGAATCCTATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAGCCATTCGCTGGCTAGAGCCACTTGCTGCAGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACAGTAA 825 0.4473 MVVIEHQETEKDRNAIPSTAAATTNDASDGFETASDTDLGSDVDANDAGGAIKHEEQDNLQQHHQQTKLEQDQEQGDSQRIISSDDASINEEELKQKALVEANEAKVEGNKLFVDAKYEEALTQYELALQVVPDMPSSVEIRSICHANRGVCFLKMGKYENTVKECSKALELNPMYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKAIRWLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFQQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1178 274 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 17 274 - -
Mal4g1178 274 SUPERFAMILY TPR-like 102 217 IPR011990 GO:0005515
Mal4g1178 274 Pfam Tetratricopeptide repeat 178 210 IPR013105 -
Mal4g1178 274 MobiDBLite consensus disorder prediction 14 35 - -
Mal4g1178 274 Pfam Tetratricopeptide repeat 145 175 IPR001440 GO:0005515
Mal4g1178 274 ProSiteProfiles TPR repeat profile. 143 176 IPR019734 GO:0005515
Mal4g1178 274 MobiDBLite consensus disorder prediction 48 75 - -
Mal4g1178 274 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 17 274 - -
Mal4g1178 274 Gene3D Tetratricopeptide repeat domain 62 241 IPR011990 GO:0005515
Mal4g1178 274 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Mal4g1178 274 SMART tpr_5 102 135 IPR019734 GO:0005515
Mal4g1178 274 SMART tpr_5 143 176 IPR019734 GO:0005515
Mal4g1178 274 SMART tpr_5 177 210 IPR019734 GO:0005515
Mal4g1178 274 MobiDBLite consensus disorder prediction 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1178 Mal-Chr4 16716937 16721716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1178 102 210 Calmodulin-binding Proteins AT3G25230 37.607 1.99e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1178 K24926 - gmx:100808386 375.555