Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1147 ATGGCTTTAAATCAGTATTTTGAGGAGGGTGTGAACCAAATTGATTCCTTGGAAGAAAAATCATCTCAGGAAATGTGGAAATGTGCAAGTGCTGAAGCTATTTCTGGTTCTAGTGGCTTTGACTGCAACATATGCTTGGAGAGTGTGCTAGATCCGGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGTCGGAAATCACGAGAAGCAGAACCCACAATGTCCAGTGTGCAAATCAGAAATTTCAAAATCATCCCTTGTTCCGCTTTACGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGATCACCAAATAGGGAGTGTCATACCGCCTAGACCGCTTGGTCCTTCATGGATGATGACGAACTTACCAAGATCACTTGATGCTGCAAATGTTTCACAACACAATTCTCGGGCTTATCATCCTCATTATCCGAATCATTCTCAACGATACACTTCGCCAATGCTTAACACAGGTGGTTCACTGCCCAATTCATGGGATACAACTTATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGAAACCAAGTGACAAACATATATACATACCCAAATTCGTATAATCTTACTGGGATCGGTAATCCAAGGACCAGAAGGCATTTGATGCGAGCTGATAAGTCGCTCGGTAGAATCTGTTTCTTCCTACTTTGTTGCACAGTTTTGTGTCTTCTCTTATTTTGA 741 0.4291 MALNQYFEEGVNQIDSLEEKSSQEMWKCASAEAISGSSGFDCNICLESVLDPVVTLCGHLYCWPCIYKWLNFHVGNHEKQNPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNDHQIGSVIPPRPLGPSWMMTNLPRSLDAANVSQHNSRAYHPHYPNHSQRYTSPMLNTGGSLPNSWDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGIGNPRTRRHLMRADKSLGRICFFLLCCTVLCLLLF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1147 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 102 IPR013083 -
Mal4g1147 246 CDD RING-HC_AtRMA_like 40 89 - -
Mal4g1147 246 SMART ring_2 42 87 IPR001841 -
Mal4g1147 246 SUPERFAMILY RING/U-box 38 100 - -
Mal4g1147 246 Pfam Zinc finger, C3HC4 type (RING finger) 42 87 IPR018957 GO:0046872
Mal4g1147 246 ProSiteProfiles Zinc finger RING-type profile. 42 88 IPR001841 -
Mal4g1147 246 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Mal4g1147 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal4g1147 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1147 Mal-Chr4 16155522 16156262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1147 34 246 C3H Transcription Factor Family AT4G28270 38.462 4.55e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1147 K10666 - gmx:100785491 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1147 4 16155522 16156262 Mal4g1147 4 16155522 16156262 ECH