Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1142 ATGGAAGATCACGTGGAAGTTGCTCGTCCTTTTGATGATATCAAAGACATTGATGAGACTAAGGATGTTTGGACTCTTGCTGTTAGGATTGTTGATCTTTGGTCAGTTATTAGCAAATATAAGAGTGAACATGTTGAAATGGTCATTATGGATGCAAAGGAATTTATGTCTGAGTTCAAAGAGATTCTAAATCATAACAAAACCTATGAGATGGAGAACTTCAAAGTCAGCAACAATGACATTGTAGTCAAAGGGAGCAATCATCCATATAGACTCACTGCCACAGGAGCAACAAACATCACTCAACAAGATTTCCCAAACATCCCTATGGCAACTCTAAATTTCAAGGATTTTGGGGATGTTATTGCAGGGAAATACAGAACAGATTTGATAGTGGATGCTATTGGAGCCTTTCAAGAAGTTACCAACACAAACAAAAGTGGATCAAACCTGAGATCCATAACTTTTTTACTTAAAGATGCTAGTGCCAATTTCCTTCACTGTTGCCTTTGGGACGATTATGCAAAGAAATTTTATGATATGTTGTCTCGCTCAAATGGTACTAATCCCGTTATCGTTGTTATCAAACATGCAAGGGTTAAGCCAGAACAAGGAAATTATCCTCTATGTTTTACCAATACCTGGGATGGCACACAAGTTCTATTTAATCCTGATTTACCAGAAGTTAATGAGTTCAAAACTAAGTTTGAAGCACTACCTAACAACGATGCTGGTCCTTCTCAAAATCCGTCCCAGTTTAGCCAAGGGTCTACACCGCTTGATATCATGTCTAGAGCTACATTCCTAAGCCTTGCTGACATTAATCAAATTCAGAAGGAAACCGTTTGTGTCACAGTTGCAGAGATAACAAAGCTTAATGCAACCAGATATGGATGGACATATGATGGATGCAAGGAGTGCACCAAAGTTTTGAAGATGGACAATGGGAAATTGAAATGCAGAGATGGGCATGTCAATGAAAAGCCTATACCAAGATACAAAGTTGAGGTGCAAGCTGTGCATAAGAAGGACAAAGCCAAGTTTTTATTTTGGGATACCGACTGTGCTTCCATTTTGAAAATCTCTGCTGCAAACTTGCGAGAACAAATGATTCAGGCTGGCCATACCAATCCAAGAACCTATCCGAAACTTCTCAATAAGCTTATCTGTAAGAAGAAGATTTTTAAAGTCAAAGCGACACCTGGTCCGAACCCATGTTCCATCATCCAAATCAGTGATAGCGAGCAATTGTTGACAAATCTTGAAAAACAATTCGGACTCGAGGAGGAAACTACAAGTAAGGAACCAATTGCGTTTGAATCTGTTTCCGAAGGAAAAGAACCAACCATCATAGCTTCCCAATCTCTTTGTAGTGAAAATGATCCAAGCCTCACTTTATCTACACCACCTGCCAAGAGGCTCTCTCTAGATGAGATTGACTCTTTTGCAATTCAGCCTTCTGTCACTTCATCTGTTGCACACGATGTTCAACCAACTCAACTTTCATCAACTAAGTTGGTTAAAAATCCAAAAAATGCCAAGACTCCAAAGCTGGAGAAGTAA 1563 0.3922 MEDHVEVARPFDDIKDIDETKDVWTLAVRIVDLWSVISKYKSEHVEMVIMDAKEFMSEFKEILNHNKTYEMENFKVSNNDIVVKGSNHPYRLTATGATNITQQDFPNIPMATLNFKDFGDVIAGKYRTDLIVDAIGAFQEVTNTNKSGSNLRSITFLLKDASANFLHCCLWDDYAKKFYDMLSRSNGTNPVIVVIKHARVKPEQGNYPLCFTNTWDGTQVLFNPDLPEVNEFKTKFEALPNNDAGPSQNPSQFSQGSTPLDIMSRATFLSLADINQIQKETVCVTVAEITKLNATRYGWTYDGCKECTKVLKMDNGKLKCRDGHVNEKPIPRYKVEVQAVHKKDKAKFLFWDTDCASILKISAANLREQMIQAGHTNPRTYPKLLNKLICKKKIFKVKATPGPNPCSIIQISDSEQLLTNLEKQFGLEEETTSKEPIAFESVSEGKEPTIIASQSLCSENDPSLTLSTPPAKRLSLDEIDSFAIQPSVTSSVAHDVQPTQLSSTKLVKNPKNAKTPKLEK* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1142 520 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 32 375 - -
Mal4g1142 520 CDD RPA1_DBD_A_like 25 100 - -
Mal4g1142 520 CDD RPA1_DBD_B_like 133 234 - -
Mal4g1142 520 Gene3D - 255 423 IPR012340 -
Mal4g1142 520 SUPERFAMILY Nucleic acid-binding proteins 274 400 IPR012340 -
Mal4g1142 520 SUPERFAMILY Nucleic acid-binding proteins 113 236 IPR012340 -
Mal4g1142 520 Gene3D - 107 243 IPR012340 -
Mal4g1142 520 MobiDBLite consensus disorder prediction 489 520 - -
Mal4g1142 520 MobiDBLite consensus disorder prediction 489 510 - -
Mal4g1142 520 Gene3D - 9 102 IPR012340 -
Mal4g1142 520 PANTHER REPLICATION FACTOR A 1, RFA1 32 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g1142 520 SUPERFAMILY Nucleic acid-binding proteins 10 102 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1142 Mal-Chr4 16116025 16118499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1142 24 398 Core DNA Replication Machinery Family AT4G19130 21.728 2.53e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1142 - - mtr:MTR_4g085760 633.254