Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1139 ATGCATTCTCAAATGCGACCCCCATCAGTAAATGCTTACGCTCCATACCTTACAGGCCAAGCTACAAGTCCACCTCCCACCGACAGATTTCCGAACAGCATGCCGATGCAAAAGCCATATTTAGGGACTCCACCACAAACCAAGGGCCGTTATCCAGCTCAACCAGGCAGCACCTCTCCCTTTCTCAGAAACAGAATCTGCCGCAGCGACCTACAGTACACAATGGTGACAACAAGGCAAGGCAATAGGAACACATACACAATCAGAGGCACCAACACGGTCATTAGAGCTGGAGACTCTGTTATGCTACGGCATACTGAAGAGAGCAAGCCAATCATTGCTCGTGTGGAGAAGATCGAGCAGGATAATTCCAACAGCACGAGAGTCCATGTTAGACGTTACTATCGACCCGAAGAAGCCATTGGAGGACGCATATGTTTTCATGGAGAAAAGGAGCTGTTTTTGTCTGATCATTATGATGATCATAGTGCTGACACAATTGAAGGGAGGTGTTTTGTGCACACTTTCAAGAACTACATGAAGCTTGAAATTGTAGGTGCTGATGATTACTTTTGTAGGTTTAGGTACGAAGTTGCTTCTGGGGCTTTCACACCTAATCGTGTTGCTGTGTTTTGCACATGCGAGATGCCTTATAACCCGAGTAAGTTAATGTTGTGGTGTGAGAATTGCAATCAACGGTACCATCCTGAATGTATGGGAGTGCCTTTTGAAGAAGCGGTGTATTTGCAGGTTTTTGGATTTGTTTGTTCTGAATGCTCATCTGATTCTGATGTTTAG 798 0.4536 MHSQMRPPSVNAYAPYLTGQATSPPPTDRFPNSMPMQKPYLGTPPQTKGRYPAQPGSTSPFLRNRICRSDLQYTMVTTRQGNRNTYTIRGTNTVIRAGDSVMLRHTEESKPIIARVEKIEQDNSNSTRVHVRRYYRPEEAIGGRICFHGEKELFLSDHYDDHSADTIEGRCFVHTFKNYMKLEIVGADDYFCRFRYEVASGAFTPNRVAVFCTCEMPYNPSKLMLWCENCNQRYHPECMGVPFEEAVYLQVFGFVCSECSSDSDV* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1139 265 ProSiteProfiles BAH domain profile. 93 207 IPR001025 GO:0003682
Mal4g1139 265 Gene3D - 71 203 IPR043151 -
Mal4g1139 265 MobiDBLite consensus disorder prediction 1 62 - -
Mal4g1139 265 Pfam BAH domain 95 204 IPR001025 GO:0003682
Mal4g1139 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 265 IPR013083 -
Mal4g1139 265 SMART BAH_4 93 207 IPR001025 GO:0003682
Mal4g1139 265 SUPERFAMILY FYVE/PHD zinc finger 203 261 IPR011011 -
Mal4g1139 265 PANTHER OS08G0421900 PROTEIN 77 264 - -
Mal4g1139 265 PANTHER CHROMATIN REMODELING PROTEIN EBS 77 264 - -
Mal4g1139 265 Pfam PHD-finger 211 261 IPR019787 -
Mal4g1139 265 ProSitePatterns Zinc finger PHD-type signature. 212 259 IPR019786 -
Mal4g1139 265 SMART PHD_3 211 260 IPR001965 -
Mal4g1139 265 ProSiteProfiles Zinc finger PHD-type profile. 209 262 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1139 Mal-Chr4 16083576 16086259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1139 114 209 Core DNA Replication Machinery Family AT4G14700 30.928 2.79e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal4g1139 BAH 8.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1139 K25868 - mtr:MTR_2g090365 321.242