Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1138 ATGGCAAAATCAACACAAGGCGAAAAGGACACATACACAATCAAAGGTACCAACAACATCGTAAGAGCTGGAGACTCTGTTCTGCTAAGGCCTACTCAAGCGAGCAAGCCAATCATAGCTAGTGTGGAGAAGATCGAGCAGGATAATATCAACAGCACGAGGATCCATGTGAGGCGCTACTATCGACCCGAAGAAGCCATCGGAGGACGCAGATGTTTTCATGGAAATAAGGAGCTGTTTTTGTCTGACCACTATGATGTTCATAGTGCTGACACAATTAAAAGGAAGTGTTTTGTATACACTTTGAAGAACTACACTAAGCTTGAGATTGCAGGTGCTGAAGATTACTTTTGTAGGTTTTCGTACAAAGTTGCTACTGGGGCTTTCACACCTGATCGTATTGCCGTGTATTGCAAGTGTGAAATGCCTTATAACCCGGATAGGTTAATGGTGCGGTGTGAGAGTTGCAAAGAACGGTACCATCCTGAATGTGTGGGCATGCCTTTAGAAGAAGCAATGAAATTGAAGGATTCAGGATTTGTTTGTTCTAAATGTTCGTCTGATCAGATGGTTAGGGACACATTAGATGGTAGTAATTGGATATTGGTTTAA 612 0.4248 MAKSTQGEKDTYTIKGTNNIVRAGDSVLLRPTQASKPIIASVEKIEQDNINSTRIHVRRYYRPEEAIGGRRCFHGNKELFLSDHYDVHSADTIKRKCFVYTLKNYTKLEIAGAEDYFCRFSYKVATGAFTPDRIAVYCKCEMPYNPDRLMVRCESCKERYHPECVGMPLEEAMKLKDSGFVCSKCSSDQMVRDTLDGSNWILV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1138 203 Pfam PHD-finger 137 187 IPR019787 -
Mal4g1138 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 198 IPR013083 -
Mal4g1138 203 SMART PHD_3 137 186 IPR001965 -
Mal4g1138 203 ProSiteProfiles BAH domain profile. 19 133 IPR001025 GO:0003682
Mal4g1138 203 Gene3D - 2 129 IPR043151 -
Mal4g1138 203 PANTHER OS08G0421900 PROTEIN 5 192 - -
Mal4g1138 203 SMART BAH_4 19 133 IPR001025 GO:0003682
Mal4g1138 203 ProSiteProfiles Zinc finger PHD-type profile. 135 188 IPR019787 -
Mal4g1138 203 SUPERFAMILY FYVE/PHD zinc finger 129 188 IPR011011 -
Mal4g1138 203 PANTHER CHROMATIN REMODELING PROTEIN EBS 5 192 - -
Mal4g1138 203 Pfam BAH domain 21 132 IPR001025 GO:0003682
Mal4g1138 203 ProSitePatterns Zinc finger PHD-type signature. 138 185 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1138 Mal-Chr4 16068536 16071756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1138 55 129 Core DNA Replication Machinery Family AT4G14700 30.667 7.18e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal4g1138 BAH 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1138 K25868 - mtr:MTR_2g090365 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1138 4 16068536 16071756 Mal4g1138 4 16068536 16071756 ECH