Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1137 ATGGTGACAACAAGGCAAGCCAAAAAGTCCATAAAGAACAAATACACAATCAGAGGCACCAACAAGACTGTAAGAGTTAAAGATTGTGTTTTGCTACGCCCTATCGGAGCTAACAAACCAACCATCGCCTGCGTGGAGAAGTTTGAGGAGGATAATATGAAAAACGTGAGAGTTCGCTTCAGAAGGTACTACAGACCTGAAGAAACCATTGCAGGACGCAGATGTTTTCATGGAGATAAGGAGTTGTTTTTGTCTGATCATCGTGGTGCTCATAGTGCTGACATAATTGAAGGAAAGTGTTCAGTGCACACTTTCAAGAACTACAAGAAGCTTGAAAGTGTAGGTGTTGACGATTACTTTTGTAGGTTTTGGTACAAAGCTTCTACTGGGGATTTCACACCTAATTGTGTTCCTGTGTTTTGCAAATGCAAGATGCCTGATAACCCCGATATGTTAATGGTGCTGTGTAAGAGCTGCAAAGAAAGGTACCATCCTGAATGTGTGGGCATGCCTTTAGAAGAAGCTATGAATTTGAAGGATTCAGGATTTGTTTGTTCTGAATGTTCATCTAAATCTGATGTTTAG 585 0.4085 MVTTRQAKKSIKNKYTIRGTNKTVRVKDCVLLRPIGANKPTIACVEKFEEDNMKNVRVRFRRYYRPEETIAGRRCFHGDKELFLSDHRGAHSADIIEGKCSVHTFKNYKKLESVGVDDYFCRFWYKASTGDFTPNCVPVFCKCKMPDNPDMLMVLCKSCKERYHPECVGMPLEEAMNLKDSGFVCSECSSKSDV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1137 194 SMART PHD_3 140 189 IPR001965 -
Mal4g1137 194 ProSitePatterns Zinc finger PHD-type signature. 141 188 IPR019786 -
Mal4g1137 194 ProSiteProfiles Zinc finger PHD-type profile. 138 191 IPR019787 -
Mal4g1137 194 SUPERFAMILY FYVE/PHD zinc finger 129 191 IPR011011 -
Mal4g1137 194 PANTHER CHROMATIN REMODELING PROTEIN EBS 4 193 - -
Mal4g1137 194 Pfam BAH domain 23 133 IPR001025 GO:0003682
Mal4g1137 194 Gene3D - 2 131 IPR043151 -
Mal4g1137 194 SMART BAH_4 22 136 IPR001025 GO:0003682
Mal4g1137 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 194 IPR013083 -
Mal4g1137 194 PANTHER OS08G0421900 PROTEIN 4 193 - -
Mal4g1137 194 Pfam PHD-finger 140 190 IPR019787 -
Mal4g1137 194 ProSiteProfiles BAH domain profile. 22 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1137 Mal-Chr4 16065291 16066659 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal4g1137 BAH 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1137 K25868 - mtr:MTR_2g090365 265.003