Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1116 ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTCAATGATGGAAGATGAAGAAACTTCACAGCTTCTTCAACAATCTCGCCATGTCAAGCATCACCGAGAACCACACTTCATCGACCAACTCGAACAAGAGGAAGATGGAGAAGACGATGGTGATGATCAGCAAGAGAACGATGAGGAAGAAGAAGATGAGCAAGGAGAAGAAGAGGAAGATGAAGAAGAGGCTGAAGAAGATGATGATGAAGGGCAGCACCATGACGATGACAAGGAAAAATCACAAGATTCCGATGAATCCCCATCTTCTGACTCTGAAGAAAAACCTGAGTATGTGTACGTAGAACTTTCGGATATCCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCTAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCTCTTATTGCTATTCTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTAAACGGCAATCTGAAGCACTAAGCAAGAAACGTAAAGATACACCAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAATCAAGCGATTGATATTCAAGGATCTGAAGAAAATGAGGAAAATGGAAATAATGAAAGAGACTCATCTTCCGGCGACGAGGTCCGACAGAGAAAAAGAAAGAGATGGACCAGAGTTCGCTCTTCTCAGCCCTCATCGTCAATGGCAAGTCCTGATGGAGGAAGCATAGAAAGTGATATGGATATTAATAGAGAAAATCGAGGAACTTCAAGGCAGGTGACAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGAAGTGGTGGTGGTAGCAACGGCAAGAGTTCCCGCAGTGGTCGAATGGCTAGGTTGGTTGATTATCTTAAAGACTTGCATGAAAACATTGATGAGTTTGATGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACCACACCAAGGTTAGAGAAGCTTCACTTGTGTTGTCGGCCAACTTCGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAAACTCCTTTGACAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTGCAAATTGTGAAAAGTCAGCGGATGAGGATTCAGTCCTGGATTTCGATGAGCTGTTATCGTTGGTTATAGATCCACAAAAAGATGAACTGGAAATTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAA 1494 0.4224 MPAQKRSLPESMMEDEETSQLLQQSRHVKHHREPHFIDQLEQEEDGEDDGDDQQENDEEEEDEQGEEEEDEEEAEEDDDEGQHHDDDKEKSQDSDESPSSDSEEKPEYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAILYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQSEALSKKRKDTPSSSSFVTRSQRNQRNLQSRRQNQAIDIQGSEENEENGNNERDSSSGDEVRQRKRKRWTRVRSSQPSSSMASPDGGSIESDMDINRENRGTSRQVTKPRKLTWGRGGFRSNTRYGSGGGSNGKSSRSGRMARLVDYLKDLHENIDEFDVHLMFISPDKETTPRLEKLHLCCRPTSSVKNLYEYVASQTPLTVEEVEILAVKGCSSANCEKSADEDSVLDFDELLSLVIDPQKDELEILQAHETVAEIRSKSISKRGHLILAYKRKV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1116 497 CDD RING-HC_RING1_like 122 162 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 230 264 - -
Mal4g1116 497 SMART ring_2 122 161 IPR001841 -
Mal4g1116 497 MobiDBLite consensus disorder prediction 266 285 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 220 358 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 311 325 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 1 107 - -
Mal4g1116 497 Pfam Zinc finger, C3HC4 type (RING finger) 121 161 - -
Mal4g1116 497 Coils Coil 55 77 - -
Mal4g1116 497 Coils Coil 188 211 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 20 39 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 83 107 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 40 82 - -
Mal4g1116 497 MobiDBLite consensus disorder prediction 344 358 - -
Mal4g1116 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 185 IPR013083 -
Mal4g1116 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 496 - -
Mal4g1116 497 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Mal4g1116 497 PANTHER OS11G0578200 PROTEIN 1 496 IPR044592 -
Mal4g1116 497 SUPERFAMILY RING/U-box 108 176 - -
Mal4g1116 497 ProSiteProfiles Zinc finger RING-type profile. 122 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1116 Mal-Chr4 15812712 15819367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1116 115 185 C3H Transcription Factor Family AT3G23060 33.784 1.33e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1116 K10695 - gmx:100776547 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1116 4 15812712 15819367 Mal4g1116 4 15812712 15819367 ECH