Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1114 ATGACTACTATTTGTGCTGAACAACAACAACAACACAAGTTTCATTCTTCTTACCAACCCCTCTCTCCCAAAAAAACCCTAAGAGATATCGACATTCCACCAAGAAAACTCCTCACCCGCCGTAACACCACCACCGCCGTCGACATCTTCTCCGACGATACTATCCTCCAAAAATTCCTCCCACACAATGACTCTGACTCTGACTCCGATGATCCTTACTCATCCGACCATTTCCGCATGTACGAATTCAAAGTCCGCCGCTGCACTCGTAGCCGGAGCCACGACTGGACTGACTGTCCATTCGCCCACCCTGGCGAAAAAGCACGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTCTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGCGGTGATACTTGTGAATTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGGTACAGAACTGAAGCTTGCAAAGATGGTAAAAATTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCAGTTACATCTTCATCTTCTTCAAATGAACAATTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAATCACGTTGCTTCAAAATCAAACAATTGTTGTTTATATTGTCACTGTGGTGGTAATGGTAATGGTGCTAATAACTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCACCACCAGCATCACCTCCTATGTCTCCGATGAAGCCACGAAACGGTGTTTCATCACTCTCACGCTATGGTTCGTCGATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCCTTTGAAGGGTTAAATTTCAATGAAAGTTCATCTTCTTCGTCTTCACCTCTTTCTGGTGCTAAGAGCATGAGTTATTTTGATGTTCCTGTTAACTTTGAGGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCATCTTCTTTTGATCAACAACATTTCAATATTCTTTCACAGTCTATTCATCAGAATTTAACACCAAGTTTCAATGATGTTGACAATAACATTATTAACAACAATATGAATATGTTTATGGGAAATAACGACAATAATAAGGTTGTTGGTGGTGGAGGTGACATTAATAGGTTGTCTTGTCCTGCCCCAGATCTTGGTTGGGTTAATGAGTTGCTGATGTAG 1212 0.4134 MTTICAEQQQQHKFHSSYQPLSPKKTLRDIDIPPRKLLTRRNTTTAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNEQFSCNKKNNKLLNNHVASKSNNCCLYCHCGGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVSSLSRYGSSINSNNLRYRDMLIDLLGSFEGLNFNESSSSSSSPLSGAKSMSYFDVPVNFEEQNQQQFIVSPSSSFDQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFMGNNDNNKVVGGGGDINRLSCPAPDLGWVNELLM* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1114 403 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Mal4g1114 403 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Mal4g1114 403 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Mal4g1114 403 Gene3D - 117 180 - -
Mal4g1114 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 29 402 - -
Mal4g1114 403 PANTHER UNKEMPT FAMILY MEMBER 29 402 IPR045234 -
Mal4g1114 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1114 Mal-Chr4 15794367 15795578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1114 70 179 C2H2 Transcription Factor Family AT5G07500 68.182 2.29e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal4g1114 zf-CCCH 1.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1114 K23047 - gmx:100801371 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1114 4 15794367 15795578 Mal4g1114 4 15794367 15795578 ECH