Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1102 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCAGCATACAGAGACAGAAGATTCCCTGGAAATCAAGAAGATTTTGAGCATGCGCTTAAAACTTCAACCACCGTTTATATTGGGAACATGTCGTTTTACACTACGGAAGAGCAAATTTACGAACTTTTTTCACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAATACTAAAACTCCTTGTGGCTTTTGCTTCGTTTTATATTACTCTCGTGAAGATACCGAGGATGCGTGCAAATATATAAGTGGGACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGGTTCCAGGATGGAAGACAATGGGGTCGCGGTCGTAGTGGTGGCCAGGTGCGTGATGAATATCGCACTGATTATGATCCAGATATCCTTTTAACTGTTTTGCATGATTTATTTGTAATTGACATCATTGTGTGA 468 0.4124 MASLFKDPAKISAYRDRRFPGNQEDFEHALKTSTTVYIGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLTVLHDLFVIDIIV* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1102 155 CDD RRM_NCBP2 36 113 IPR034148 -
Mal4g1102 155 SUPERFAMILY RNA-binding domain, RBD 19 137 IPR035979 GO:0003676
Mal4g1102 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Mal4g1102 155 SMART rrm1_1 35 108 IPR000504 GO:0003723
Mal4g1102 155 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 139 - -
Mal4g1102 155 Gene3D - 6 140 IPR012677 -
Mal4g1102 155 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Mal4g1102 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1102 Mal-Chr4 15431299 15433620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1102 33 107 Eukaryotic Initiation Factors Gene Family AT1G49760 28.000 1.73e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1102 K12883 - gmx:100776217 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1102 4 15431299 15433620 Mal4g1102 4 15431299 15433620 ECH