LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g1027	ATGATGTTATCAGCTTCACCATCTTCTCTAGCAAGAAGTTCCTTAGAAGAGATGCTTGATTCGCTACGCCGGCGAGATGAAGAGGAGAAGCCTAAAGACCTACCGCCGGCATTGCCAGCAAGGCCGACGTCGAGAGGCCGGTTGCCGCCGGCGAGAAGGTCTTTGCCTAAAAGCTTTAAGGTTGATGGTGAAAATGGAAAGGGAATGGGACATAGAAGGAAAGGAAGTTTTGGGAATAAGAAGTTGATTTTGGATTTGGAATCTCCTTATGTGGTTATTTCAGAAGAGAATAGTGTTATTAGTGAGCAATCTTCACCTGCTCCTGTTTCTTCAATTCCTGTTGATGATTCTTTTGTTGCTCCACCTTCTCCGGTATTGGAAGATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAGAGGGAAGTGGGGACTCGGAAGAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAGATGGAAATGTTATGAAAGTGGCACGAACAGATCTCTTACCAGCTAATCCTGATATTTTAGAGGGTGTGGATGATCTTATACAGCTCAGCTACCTGAACGAGCCCTCGGTTCTTCACAATCTTCGGTTTAGATATTCTCAAGATATGATTTATAGTAAAGCTGGGCCAATTTTAATTGCTCTCAATCCCTTCAAAGATTTACAGATTTACGGAAACGATTATGTCTCTGCTTATAGGAAGAAATCTCTTGATAGTCCTCACGTTTTCGCCATGGTAGATGCAGCTTATAATGAAATGATAGGAGATGAAGTAAATCAATCCATTATCATAAGTGGCGAGAGTGGTGCTGGGAAAACAGAAACAGCAAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGTGCAACGGGAAAAATGTGTGGGGCTAAAATTCAAACCTTTCTATTGGAAAAGTCAAGAGTTGTTCAACTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCTGGATCTTCACCTCATCTTAAAGAGAGACTAAATCTTAGAGCGGCCAGCGATTATAAATATCTTAATCAGAGTGACTGCATGACAATTGATGGTGTCGACGACGCTAAAAAGTTTCATAGGCTGAGGAAAGCATTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAGCGGGTCTTTAAGATGCTCGCTGCAATATTATGGCTGGGAAATATATCATTCCAAGTTAATGATAATGAAAATCACATTGAAGTGGTGAACGATGAAGCTGTAATCAGTGCTGCGTCGCTGATGGGTTGCAGTTCTCAGGGACTAATGACAGTATTATCGACTCATAAAATTCAAGCTGGCAAGGATACTATCACCAAAACATTGACATTGCGGCAGGCAATTGATGCAAGAGATGCGTTAGCAAAATTTATCTATGCTAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTTGGTAAACGACGTACTGGGAGATCCATAAGTATCCTTGATATTTACGGGTTTGAGTCATTCGAGAAAAACAGCTTTGAACAACTTTGTATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTTTTTAAACTGGAGCAACAGGACTACGAAGTAGATGGTGTTGACTGGACCAAAGTAGATTTTGAGGACAATCAAGAGTGTTTGGATCTCTTTGAGAAGAAGCCTATAGGGCTACTCTCTCTGTTGGACGAGGAATCAAATTTTCCAAGGGCCACTGATCTAACACTTGCCAACAAACTTAGGCAGCACCTGCAAGCTAATCCCCGCTTTAAAGGGGAATGGGGAAAGGGTTTCAGTGTTTGTCATTATGCAGGAGAGGTTGTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCTGATTCCATTCAACTACTATCATCATGTAGTTGTGAACTGCTGCAGTCGTTCTCCAAGACGCTTAACCAGTCTCAGAAGCAATCAAATTCTCAGCATGTAGGTGCTTTTGATTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAGTTGGAGAGCACGACGCCTCACTTTATTCGATGTATAAAGCCAAATGCAAAGCAACTTCCTGGCATATATGATGAAGATCTTGTTCTCCAGCAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGAGCCGGATATCCTACTCGAGTTACACATCAAGAGTTCGCCAGAAGGTATGGGTTTTTGCTCTATGAGGCCAACACATCTCAAGATCCGTTAAGTGTCTCGGTTGCGGTTTTGCAACAATTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTGGAGGATAAGAGAAAACAGGTTTTGCAGAGAATACTCGAGATTCAAAAATCCGTTCGTGGTCATCAAGCTCGCAGTCATTACAATAAACTTAAGAATGGAGTGACAACTTTACAATCATTTGTCCGCGGAGAAATTGCGAGAAGGAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATTGAGGAGATAGAGGCTATCATACTACTACAATCTGTAATTCGTGGTTGGTTGGTTCGGAGGCATAATAGTAGCTTGAATAAGTTCAAGAGACATCCCGAGAATGGAAAATCTAGGCGAAGATCACATTCGAAGTTGTCAGACGACAAGGATGCATCGAAAGATCGGGGTCAAAATCTGCCTTCGGCTTTAGCAGAACTCCAAAGGCGGGTTGTGAAGGCCGAAGCAACTATAGAGCAAAAAGAAGAGGAAAATACCGAGTTGAAGGAACAGCTAAAACAATTTGAGAAAAGGTGGATTGAATACGAGAAAAGGATGAAAACAATGGAGGAAATGTGGCAAAGACAAATGTCATCTTTGCAATTGAGTCTTGCTGCTGCTAGAAGCAGCCTTGCTTCTGAGAATGCCAATGGTCAACCTTCAAGACATGATGTTGCATCACCATCACCTTTCTGTTATGATTCCGAGGATGCTACATCAATGGGATCTCGAACACCTCGAACACCCGGTTGCAGCACACCTTTGAAGTATTCTAGCAGTCTTTCCGAAGTCAAAGCAATGAGAGATGGTAACGGTACTTTGGGCAATCTGATGAAGGAGTTCGAGCAGCGCAGTCAGACATTTGATGAAGATGCAAGGGCTTTGGTCGAGGTTAGATCAACAGGGCAATCTGCGAATCCGAATTCCATTGAAGAACTGCGGAAACTCAAACACAGGTTTGAAGGGTGGAAGAAAGAATACAAGATGCGATTAAGGGAAACGAAAGCAAGACTTAAATTACGGAATTCAGAAATGGAAAAAAGTCGGCGGAGATGGTGGGGGAAATTGAGTTCTAGAGCACAATAA	3600	0.4175	MMLSASPSSLARSSLEEMLDSLRRRDEEEKPKDLPPALPARPTSRGRLPPARRSLPKSFKVDGENGKGMGHRRKGSFGNKKLILDLESPYVVISEENSVISEQSSPAPVSSIPVDDSFVAPPSPVLEDDNVSYFIKKKLHVWCRQPRGKWGLGRIQSTSGEQASVSLSDGNVMKVARTDLLPANPDILEGVDDLIQLSYLNEPSVLHNLRFRYSQDMIYSKAGPILIALNPFKDLQIYGNDYVSAYRKKSLDSPHVFAMVDAAYNEMIGDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGSSPHLKERLNLRAASDYKYLNQSDCMTIDGVDDAKKFHRLRKALDVVQMCKEDQERVFKMLAAILWLGNISFQVNDNENHIEVVNDEAVISAASLMGCSSQGLMTVLSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFEKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEVDGVDWTKVDFEDNQECLDLFEKKPIGLLSLLDEESNFPRATDLTLANKLRQHLQANPRFKGEWGKGFSVCHYAGEVVYDTNGFLEKNRDPMPSDSIQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGAFDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNAKQLPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRVTHQEFARRYGFLLYEANTSQDPLSVSVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKQVLQRILEIQKSVRGHQARSHYNKLKNGVTTLQSFVRGEIARRKYGVMVKSSITISSENIEEIEAIILLQSVIRGWLVRRHNSSLNKFKRHPENGKSRRRSHSKLSDDKDASKDRGQNLPSALAELQRRVVKAEATIEQKEEENTELKEQLKQFEKRWIEYEKRMKTMEEMWQRQMSSLQLSLAAARSSLASENANGQPSRHDVASPSPFCYDSEDATSMGSRTPRTPGCSTPLKYSSSLSEVKAMRDGNGTLGNLMKEFEQRSQTFDEDARALVEVRSTGQSANPNSIEELRKLKHRFEGWKKEYKMRLRETKARLKLRNSEMEKSRRRWWGKLSSRAQ*	1200

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g1027	1199	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	162	910	IPR027417	-
	Mal4g1027	1199	Pfam	IQ calmodulin-binding motif	923	940	IPR000048	GO:0005515
	Mal4g1027	1199	Pfam	IQ calmodulin-binding motif	867	881	IPR000048	GO:0005515
	Mal4g1027	1199	Pfam	IQ calmodulin-binding motif	888	904	IPR000048	GO:0005515
	Mal4g1027	1199	Coils	Coil	1166	1186	-	-
	Mal4g1027	1199	PRINTS	Myosin heavy chain signature	219	238	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Mal4g1027	1199	PRINTS	Myosin heavy chain signature	273	298	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Mal4g1027	1199	PRINTS	Myosin heavy chain signature	548	576	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Mal4g1027	1199	PRINTS	Myosin heavy chain signature	601	629	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Mal4g1027	1199	PRINTS	Myosin heavy chain signature	316	343	IPR001609	GO:0003774\|GO:0005524\|GO:0016459

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g1027	Mal-Chr4	14219077	14229436	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g1027	1	1193	Myosins gene family	AT5G54280	62.217	0.0	1539

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g1027	K10357		-	gmx:100819335	1892.09

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal4g1027	4	14219077	14229436	Mal4g1027	4	14219077	14229436	ECH

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