Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0963 ATGGTTTCCCCGGAAAGCACCAATTGGCTTTTCGATTACGCTTTGATTGATGAAATTCCTGTTTCTGTTGATGGCTCCTTCGCCTTCACGTGGCCCCCACCAAACCTCTCCAATGGCGGTGTTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCAAAGAAGAGGGGTAGATCGGATTCGTGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGAGGAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCGGCCATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGAGGTGAAGCCCAGAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAAATTAAAGAGTTAAAGGTTGAGAAGAATGAACTCCGTGATGAGAAGCAGAGGCTTAAGGCCGAGAAAGAGAAGTTGGAGCAGCAGGTGAAATCAATGAATGCCCAACCTGGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCTGCATTTGCTCATCAAGGCCAAGCCCCTGGCAACAAGTTAATGCCTTTTATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAGGATCACGTCCTCCGTCCACCAGTTGCCTAA 696 0.4871 MVSPESTNWLFDYALIDEIPVSVDGSFAFTWPPPNLSNGGVEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNAQPGFLTHPPAIPAAAFAHQGQAPGNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0963 231 Gene3D arf6 gtpase in complex with a specific effector, jip4 119 173 - -
Mal4g0963 231 Gene3D - 60 118 IPR036638 GO:0046983
Mal4g0963 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Mal4g0963 231 MobiDBLite consensus disorder prediction 48 63 - -
Mal4g0963 231 PANTHER BHLH TRANSCRIPTION FACTOR 1 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Mal4g0963 231 CDD bHLH_AtILR3_like 74 149 - -
Mal4g0963 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 145 IPR036638 GO:0046983
Mal4g0963 231 Coils Coil 117 172 - -
Mal4g0963 231 SMART finulus 75 126 IPR011598 GO:0046983
Mal4g0963 231 MobiDBLite consensus disorder prediction 38 77 - -
Mal4g0963 231 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
Mal4g0963 231 Pfam Helix-loop-helix DNA-binding domain 73 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0963 Mal-Chr4 12783032 12785075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0963 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.936 4.86e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal4g0963 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0963 - - ccaj:109815088 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0963 4 12783032 12785075 Mal4g0963 4 12783032 12785075 ECH