Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0882 ATGGACTCAATAGTGTACACCAATAATTTTGAGCAGCATGACTTCATTGAGGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGAATGAAGATGCAATATGTAACATCAGTTCTAACCTTATCAATGATTGCTTCATTGATAATAATAATCATCAACTTCCATTATTTGATCACAACAACATCAACAACAATATTAATAATGTTGTGAATCTGTATAATCCAAGCTCCACAACAATAGGCTCCTTCTCTTATTATGACGGGGAGGTTAAAGGAGAAGGAGAAAACGATGGAGGTGGTTCTTCTGCAACAACAACAACCACGGCCACCACCGTCGATGATGCTAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCCGGATGAAGGATAAGCTTTACGCATTGCGTTCTTTGGTTCCCAATATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGCAGTTGAAGGCTGAGGTTTCAGGACTTGAAGCATCTTTATCTGTGTCTGAAAATTATCAAGGATCAATTAACAACACCATTAATGTTCAAAACCATCCCATTTGCAAGAAAGTTATTCAGTTGGACATGTTTCAAGTGGAGGAAAGAGGATATTATGCAAAAATAGTGTGCAATAAAGGGGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTTCAAAATTCAAACTTGGATACAGTTTGTGACACTTTTGTACTTACATTTACATTGAATGTAAATGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA 924 0.381 MDSIVYTNNFEQHDFIEDPNFDQFIDLIRGENEDAICNISSNLINDCFIDNNNHQLPLFDHNNINNNINNVVNLYNPSSTTIGSFSYYDGEVKGEGENDGGGSSATTTTTATTVDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARQLKAEVSGLEASLSVSENYQGSINNTINVQNHPICKKVIQLDMFQVEERGYYAKIVCNKGEGVAASLYKALESLANFNVQNSNLDTVCDTFVLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0882 307 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 8 304 - -
Mal4g0882 307 MobiDBLite consensus disorder prediction 100 117 - -
Mal4g0882 307 Pfam Helix-loop-helix DNA-binding domain 130 173 IPR011598 GO:0046983
Mal4g0882 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 199 IPR036638 GO:0046983
Mal4g0882 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Mal4g0882 307 Gene3D - 114 189 IPR036638 GO:0046983
Mal4g0882 307 Coils Coil 169 189 - -
Mal4g0882 307 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 304 - -
Mal4g0882 307 SMART finulus 129 178 IPR011598 GO:0046983
Mal4g0882 307 MobiDBLite consensus disorder prediction 93 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0882 Mal-Chr4 10926637 10928266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0882 8 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.799 6.12e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal4g0882 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0882 - - gmx:100805451 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0882 4 10926637 10928266 Mal4g0882 4 10926637 10928266 ECH
Mal4g0882 4 10926637 10928266 Mal7g2010 7 72386467 72389020 PCT