Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0878 ATGTTGTCTAAAATGGACATTGAAGGAATTATAGGGTCCGATGAACATGTTAAGGATGCTAGCCACCTCATCAAAGGAAAGCGCACGAAACGGTTAAGGCACTTGTCTCCTGTCACCGTGGCAACTGGTACGGTGACATCAAGCTGCTCAAGTGCCACTGGAGGTGGTGGATCATTTTCATCCACCACCTTCGATGGCACTGAACAAGAAGAGGAAGCAGACATGGCTAATTGTTTGATTCTCCTAGCTCAAGGAAGAACTGGAGGAGGAGAAGAAGAGAATCAAAATCTTCGTCGTCATCAGAATCACCACCTCCACAACAACAGCCAACAAGTGGATGGTTGCAACAAAATAACAATTGAAAAGACGACAAAAAACGGTTTTGATAGTTATGAGTGCAAAACTTGTAACCGTTTTTTCCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAGGATGAAAGAAGAAAAACAATCATCGCCACCGCAGCCGCGACAAATCACTGCCACAGGTGAATTTGAACACGAAAACAAGCAAATTCATACCAAGAATATTAGTCCTTTTGTTCCTCCAGTTTCTCTTGAATTAAGGTGTGGTGTTAATATCAACTTCAAGCCCAATAGGCCCAATAAGGTTCATGAGTGTTCAATTTGTGGAGCTGAATTCACATCAGGTCAAGCATTGGGTGGTCACATGAGGAGACACAGAGCATGTACCAATAACAATAACAAAAACAACAACGTTGGTGCTGTTGTTACATCTTTTGAAGATGTTCATGTTAAGTCTAGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCACCGGAGGAAGATCTCCGGGATTCGACGTTTCAGTTTCCGGCGTTGGTGGGTTGCCATTATTAA 900 0.4278 MLSKMDIEGIIGSDEHVKDASHLIKGKRTKRLRHLSPVTVATGTVTSSCSSATGGGGSFSSTTFDGTEQEEEADMANCLILLAQGRTGGGEEENQNLRRHQNHHLHNNSQQVDGCNKITIEKTTKNGFDSYECKTCNRFFHSFQALGGHRASHKKPRMKEEKQSSPPQPRQITATGEFEHENKQIHTKNISPFVPPVSLELRCGVNINFKPNRPNKVHECSICGAEFTSGQALGGHMRRHRACTNNNNKNNNVGAVVTSFEDVHVKSRNVLELDLNLPAPEEDLRDSTFQFPALVGCHY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0878 299 MobiDBLite consensus disorder prediction 147 172 - -
Mal4g0878 299 Pfam C2H2-type zinc finger 217 242 - -
Mal4g0878 299 Pfam C2H2-type zinc finger 131 156 - -
Mal4g0878 299 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Mal4g0878 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Mal4g0878 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Mal4g0878 299 SMART c2h2final6 218 240 IPR013087 -
Mal4g0878 299 SMART c2h2final6 131 153 IPR013087 -
Mal4g0878 299 SUPERFAMILY beta-beta-alpha zinc fingers 130 240 IPR036236 -
Mal4g0878 299 Gene3D Classic Zinc Finger 128 240 - -
Mal4g0878 299 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 299 - -
Mal4g0878 299 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Mal4g0878 299 PANTHER ZINC FINGER PROTEIN ZAT5 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0878 Mal-Chr4 10824964 10825863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0878 10 299 C2H2 Transcription Factor Family AT2G28200 39.432 2.84e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0878 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0878 - - gmx:100794834 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0878 4 10824964 10825863 Mal4g0878 4 10824964 10825863 ECH
Mal4g0878 4 10824964 10825863 Mal1g1879 1 24444930 24445970 ECH
Mal4g0878 4 10824964 10825863 Mal1g3129 1 48075219 48076121 ECH
Mal4g0878 4 10824964 10825863 Mal7g2008 7 72299394 72300287 ECH
Mal1g3129 1 48075219 48076121 Mal4g0878 4 10824964 10825863 ECH
Mal4g0878 4 10824964 10825863 Mal7g2008 7 72299394 72300287 PCT