Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0877 ATGATGTCAAGGACAACACCTCTAGGCTTTGAAATTGAAAATCAAGGCCTACAAATGTTTCCTATGGTCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAGGGAATTTCTAGTTCAACTTCACCCTCCAATTCCCTCCTCTTCAATCTCTCTACTCTCAAAGAGAAGCTCAATCAAGTGCAAAATCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTTGTCAACTTCCATGGCATTATCCACAATGAACTCTACAATACAAGAAATCATAGTAACTTCCACATCAATGATGTTCACTTGTCAACAGATGGCTCTTAGTTTCCCTCAAGGTACTACTATTAAATGCACAAGCCAAGAATTTCAAAAGCAACAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAACATTATTGATGTTAGAGGTCAAAGCTTATTTTCTAATAATGATTCAGAACCATTGGATTGGTTTGGTGAAAGCTATAATAGCAACATTAATTATAGGCTCAAGGATGATATTGATGATCAAAGGGTTGATCAAGAAATTAGTGAAACCAATAATAGTATAAGAGGGTATAATGAAGATATTTCAACGAAAAATGATTCTGATGGCGACGATACATGCTTAAAATTTGGGTCATCTTATACTTGGGTCGGTCCAGAATGTAACAATGAGATAGTTGAATTGGATGCGGAGGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGTAAAGGGTTCAAGAGGGATGCAAATTTGAGAATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAATAGAGATTATTTGATGAGTATGAAAAACAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAGCATGTCAAGTTTCAACCTTTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAGAGGTGTAATTTGAAGCAATTCTCTGTTCTTTCTGATTTGAGGACACATGAGAAGCATTGTGGTGATCTTAGGTGGCAGTGCTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGTCACCACCCAGTTATCAATGGTTTGTCATATAGTACTCACACAAATTAG 1200 0.3675 MMSRTTPLGFEIENQGLQMFPMVTEDLMPLPNSMEGISSSTSPSNSLLFNLSTLKEKLNQVQNLVGVILSPNQQDLSTSMALSTMNSTIQEIIVTSTSMMFTCQQMALSFPQGTTIKCTSQEFQKQQSNIQSNFGNNDTNIIDVRGQSLFSNNDSEPLDWFGESYNSNINYRLKDDIDDQRVDQEISETNNSIRGYNEDISTKNDSDGDDTCLKFGSSYTWVGPECNNEIVELDAEDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKNRDYLMSMKNKKYSCPQEGCRWNQKHVKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHTN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0877 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 395 IPR044300 GO:0010044|GO:0010447
Mal4g0877 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Mal4g0877 399 PANTHER OS08G0562300 PROTEIN 12 395 - -
Mal4g0877 399 SUPERFAMILY beta-beta-alpha zinc fingers 242 268 IPR036236 -
Mal4g0877 399 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Mal4g0877 399 Gene3D Classic Zinc Finger 331 380 - -
Mal4g0877 399 SMART c2h2final6 244 266 IPR013087 -
Mal4g0877 399 SMART c2h2final6 295 328 IPR013087 -
Mal4g0877 399 SMART c2h2final6 333 355 IPR013087 -
Mal4g0877 399 Gene3D Classic Zinc Finger 229 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0877 Mal-Chr4 10795327 10796526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0877 44 388 C2H2 Transcription Factor Family AT5G22890 48.603 1.16e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0877 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0877 - - gmx:100802769 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0877 4 10795327 10796526 Mal4g0877 4 10795327 10796526 ECH