Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0870 ATGGGGAGCAAGGTCACCGACCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCACCGACATGGAAATCATCAGAGCCCTACACTTGGCAAAAAACGACGTCACTGCCGCCATTAACATCATCTTCGACACTCCTAAATCCCAACCCACTACACGCGCTTCCAACACTCAACGAGTTTCTCCTCCGAAATCATCTCCACGCGCTGTCACCCCACGCGCCGTCACCACCAGTACCAAGAATAACGCTGATGAAGAAAACAATAAATGCTCTGTTGAATCGGAATCCAAAGATTGGTGGTTTGTTGGTTCCGGTGAAGTGGCGGGGTTATCTACGTGTAAAGGGAGGAGTATAAAATCTGGTGATAAAGTGATTTTTAAGTTTCCGGTTAAAAAGGTTTCTGTTTCGCCGTCTCCGGGGAAGGGTTTTGGTAGAGCAGCAGCAAGTTGTTCGGAGATTGTTCGATTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCGAACGAATGGGCGCGATGTTTGTTGCCACTGGTGCGGGATAGTAAGGTTAGGGTTGAAGGGAAATGTGAATTTGCGCCGAATGTTTTGGGCATCATGGATACTATCATTTTGTCAATAAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCATCATGTTTCTCTTAAGGATGCTACGAATTCAACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCCGGTGATTTCATTTCCAACAAGCGTCCTTTCAGTCAAACGGCCACATTACTACATGCCAAGTCTGAGCGTCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGATTCTGTTTCTGAATTTGATCTCGACAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGAAATCTTCTCTGTGAACTGCGGCCCTATCAAAAACAGGCCCTTCATTGGATGGTTCAGATGGAGAAGGGACGACCAAGGGACGAGACGGCGACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATTCATTTTCTGGTGAAGCCACAACAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTAGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCACTTCTCGTTGCCCATTCTGGAAGGGGTGGATCATTAGGCAGTCAACCTATAGCTCAGTCCTTTATTGAAGGTGGTGAAGTTAGTGACACTGATACAATTCCCAATCTTTCCAACATTCCAAAGAAGACAACCAAATTTTCTGGTTTTGATAAATCAACGACGAAAAACACTTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGAACCCTGGGTCCCTGTCTCTATATGTTCATTATGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGTGATGTTGTAATTACTACATACGGAATTTTGGCCTCTGATTTTTCCAGCGAGAATGCAGAGAATAATGGTGGACTTTTCTCGATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCCTCTAAAAGCCAAGTTTCCATGGCAGCTTCTGCTCTAATTGCCGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTTCGCTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCCGCCGATATGCAGGTAATTTACTGTGAGCCCACAGAAGCTGAAAAGGACTTTTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTCGAGCAAGGACGCGTTCTTCATAATTATGCTTCGATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTTGTAATGAGTCGTGGCGATACTCAAGAATTTGCTGACCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGATCCTGTAATGCTTCAGAAGGTGAAGTAAAAGATGCACTCTCACGAGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGATCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGACGCAGTGTTGACACCATGTGCTCACCGCCTTTGTCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTACCTCTGGTTTATGTCCTGTTTGTAGGAAAACAGTGAGCAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGATTTCAGATTGATATTGAGAAGAATTGGGTTGAGTCATGCAAGGTAACTGGTCTTATGAGTGAACTTGAAAATCTTCGCTCATCAGGATCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATTTCATTTGTCCGTCTGGATGGGACATTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACATACAGGTCTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTGATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATCGTGAAGGGGTCAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGATCAGGAAGTTCGATCTGCGCGAATTGAAGAGTTGAAGATGCTTTTTACTTAG 3036 0.4463 MGSKVTDPNLSTVRSIVGSEFTDMEIIRALHLAKNDVTAAINIIFDTPKSQPTTRASNTQRVSPPKSSPRAVTPRAVTTSTKNNADEENNKCSVESESKDWWFVGSGEVAGLSTCKGRSIKSGDKVIFKFPVKKVSVSPSPGKGFGRAAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDSKVRVEGKCEFAPNVLGIMDTIILSISVFINRSMFVKHHHVSLKDATNSTDESVFHPLPALFRLLGLSPFKKAELTPGDFISNKRPFSQTATLLHAKSERPSQNGHENENEDSVSEFDLDNIVGVASSSELEEMDPPGNLLCELRPYQKQALHWMVQMEKGRPRDETATTLHPCWEAYRLADKRELVVYLNSFSGEATTEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQPIAQSFIEGGEVSDTDTIPNLSNIPKKTTKFSGFDKSTTKNTSLTSGGNLIICPMTLLGQWKAEIETHVNPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGILASDFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLSKLAKRFLRGSCNASEGEVKDALSRAYVQEVVEELRKGDQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSKQDLITAPTESRFQIDIEKNWVESCKVTGLMSELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0870 1011 SMART helicmild6 875 958 IPR001650 -
Mal4g0870 1011 Pfam HIRAN domain 105 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal4g0870 1011 ProSitePatterns Zinc finger RING-type signature. 791 800 IPR017907 -
Mal4g0870 1011 MobiDBLite consensus disorder prediction 49 89 - -
Mal4g0870 1011 Pfam Helicase conserved C-terminal domain 852 958 IPR001650 -
Mal4g0870 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 604 IPR014001 -
Mal4g0870 1011 CDD RING-HC 776 815 - -
Mal4g0870 1011 PANTHER DNA REPAIR PROTEIN RAD5 92 1011 - -
Mal4g0870 1011 SMART ultradead3 323 626 IPR014001 -
Mal4g0870 1011 Pfam Zinc finger, C3HC4 type (RING finger) 773 821 - -
Mal4g0870 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 828 IPR013083 -
Mal4g0870 1011 SMART ring_2 776 815 IPR001841 -
Mal4g0870 1011 Gene3D - 658 1011 IPR027417 -
Mal4g0870 1011 ProSiteProfiles Zinc finger RING-type profile. 776 816 IPR001841 -
Mal4g0870 1011 Gene3D - 383 654 IPR038718 -
Mal4g0870 1011 SMART HIRAN_2 104 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal4g0870 1011 CDD DEXDc_SHPRH-like 327 642 - -
Mal4g0870 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1005 IPR027417 -
Mal4g0870 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 846 1011 IPR001650 -
Mal4g0870 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 642 IPR027417 -
Mal4g0870 1011 CDD SF2_C_SNF 842 969 - -
Mal4g0870 1011 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 92 1011 - -
Mal4g0870 1011 MobiDBLite consensus disorder prediction 49 87 - -
Mal4g0870 1011 Pfam SNF2-related domain 330 720 IPR000330 GO:0005524|GO:0140658
Mal4g0870 1011 SUPERFAMILY RING/U-box 763 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0870 Mal-Chr4 10720811 10730235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0870 1 1011 RAD5 or RAD16-like Gene Family AT5G22750 70.367 0.0 1470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal4g0870 SNF2_N 6.2e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0870 K15505 - gmx:100794558 1692.55