Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0848 ATGGCGAAAGGAACGGATTCAGACGAGTTTATGGTTCTCTCTAGGGTTAGAACAGGTTTGAAACGAGAATTTGCGTTTGCAATGAAGGCTCAATCTGAGATCGATGGTTCGTTGGGTCGAACCAGGGGTGGTAGTAAGAACCGGAATGAGGGTCCGGTTCAGGAATCGCCGGTTGGGAAAAGGGCTAGAAAAACCGGTTTAGATGATGTGGGTGGTGGTGGAGGGATGAGTGAGGAAGAGGCTAAGAGCGATGTTGTGGATATTGTTAGTGATGAAGAGGCTAAGAATGTTGAAAGGGAAAATGGGTTTTCGTCAAAATCTGATTTTGATGTGAAGAGTGATGTGGTTGTTGAAACTGTGATTGATGAAGAAACCCTTTTGAAGGAAGAAGAAAAAGTTGTGAATGAAATGGAAATAAAAACTGTTTGTGAAATCAAAGATGAAACCCTAGAGGAAAAGGGTACCCTTTTAGGGGATGGTGGTAATGTTGGTGGAAAAAGGAAAAAAAGGGTGTCATTGGAGAAACCAGTAAGGAGGTTTACAAGGTCAGCATTGAAGGAAAAAGATGAAGAAACTAAGGATAATGTTGTTGTTGGAATTGATGTTGATAATGTTGTTGAAAAGGAAAATGGGGTTTCTGGAGTTTCGCCAATTATGGTGACTCCGACTCCGATGAAATTCAGTAAATCTGGTTTGAAGAGGTTTCCTGTCAAGCTAAAGGATCTTCTGGCTACAGGGGTTCTTGAGGGATTGAAAGTTAGATATGTCAAGGGACAGAAGGCGCGTAAACCGGGAGAAAAAGATTTACAAGGTGTGATTAAAGATGCTGGGATTTTGTGCTCTTGTGGGAGTTGTAAGGGGATTCAGGTTGTCACGCCGACTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCTCCGGAGTATACTTACCTTGAGAATGGAAAACTCCTTCGGGATGTCATGAATGCCTGTTCAAGTCTCCCGTTGGACACATTGGACGAAGCGGTCCAAATGGTCCTCGGTGAATTCACCATGCAGAGATCTAATATCTGTTTCAATTGCAGAGGGTCAATTTCTGAATCTAACAATGGTGAGTCAAAACTAGTATGCAATCCATGCATGGAGTTGAAAGAGTCTCAAACTAGCCAACTTCAAGCAGCAGCAACATGTAGTAAAAGTATTACCCCAGTTGTTCAACCCAGATCACTAGAAACGGTAGTAGTTCCAGAATCATTAAATACTGAGATGGTGGTTCCAAAGTCATCAAACCCTACACAGATGGTGGTTCCAGAGTCATCAGAAACACAGGTGATTCCAAAGGCATTGAGCACCGGCATGAAGCAGAGTGCATCTCGTGGCAAGAGTCGTGGAAAAATAACTAGAAAGGATCTACGGTTGCATAAATTGGTATTTGAAGACGACGTGTTACCAGATGGAACTGAAGTAGCTTACTACTCTCATGGAAAGAAACTATTGGTCGGTTACAAACAGGGATACGGAATTTTTTGTACCTGTTGCAATGCGGAGGTTAGTGCCTCTACGTTTGAAGCTCACGCTGGATGGTCATCTCGACGCAAGCCTTACCTGCACATATATACATCTAATGGAGTCTCACTACATGAGCTGTCCCTCTCTCTATCAAAAGATCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTGCCATGCATTCCAAGTGGTACTTGGTATTGTAAATATTGCCAGAATAATTTTCAGATGGAGAGTAATGCACAACGTAATATGAATGCTCTGGCAGCTGGAAGGATTGAAGGCATTGATCCTTTAGAACAGATAAACCGAAGATGCATTCGCATTGTCAAAAGTGTAGCTGTCGACCATGGGGGATGTGCCTTGTGTGGATGTCATGATTTCGTTAAAATATTTGGCCCTCGAACAGTAATTATCTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTTTGAAGGAGCACAGCATGCAGAATTTAGAGGAATTACCTGAAGGGGATTGGTTCTGCAGCACAAGTTGTAGTCATATTCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATAGTCTCCCAGATTCAATTCTAAGTTTGATAAAAAAGAAGCATGACTCTGGCGTTGAAGAGAAAGGTGCAGATACTGGCGTTGAAGAGAAAGGTGCAGGCACTGTCGTTGAAGAGAAAGGTGCAGACGCTGGTGTTGAAGGGAAAGGTGCAGGCACTGTCGTTGAAGAGAAAGGTGCAGACACCGGTGCTGAAGAGAAAGGTGCAGACACCGGCCTTGAAGAGAAAGGTGCGGCCACCGGCCTTGAAGACAAAGGTGCAGACACCGGCGTTGAAGAGAAAGGTGATGACACTGGTGTTGCTCCCGAAATTAAATGGAGGGTTCTGAACTGGAAGTTAGTTGCGTCTGGTGAAAATAAGCAATTGTCTGATGAATATAGGCAAGTGCTTTCGAAGGCTGTTTCCATCTTCCATGAGAGATTTGATCCTATAGTTGATTCGTCTTCTGGCCGTGATTTCATTCCGACAATGTTATTTGGAAAGAACATCCGCGGGCAAGATTTTGCCGGAATGTACTGCGCAGTGCTGACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTCCGTGTTTTTGGGCCAGAAGTTGCAGAACTTCCTTTGGTGGCGACAGTTTCTGAGTACCAAGGACAGGGTTACTTTCAATGCTTGTTTTCTTGCATTGAGAGACTACTTCAATCTCTAAGCGTGAAAAACCTTGTCCTACCGGCTGCTGATGAAGCTGAATCAATATGGACCAACAAATTTGGGTTTACAAAGCTCGAGCACGATGAGATCAACAATTACAAGAAGTTTTATCATATGATGATCTTTCAAGGGACCTCAGTCCTACAGAGGCCTGTTCCTACACTACCGAGTACTTCTCAGGAGATTGTATAA 3036 0.4351 MAKGTDSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEGPVQESPVGKRARKTGLDDVGGGGGMSEEEAKSDVVDIVSDEEAKNVERENGFSSKSDFDVKSDVVVETVIDEETLLKEEEKVVNEMEIKTVCEIKDETLEEKGTLLGDGGNVGGKRKKRVSLEKPVRRFTRSALKEKDEETKDNVVVGIDVDNVVEKENGVSGVSPIMVTPTPMKFSKSGLKRFPVKLKDLLATGVLEGLKVRYVKGQKARKPGEKDLQGVIKDAGILCSCGSCKGIQVVTPTVFELHAGSANKRPPEYTYLENGKLLRDVMNACSSLPLDTLDEAVQMVLGEFTMQRSNICFNCRGSISESNNGESKLVCNPCMELKESQTSQLQAAATCSKSITPVVQPRSLETVVVPESLNTEMVVPKSSNPTQMVVPESSETQVIPKALSTGMKQSASRGKSRGKITRKDLRLHKLVFEDDVLPDGTEVAYYSHGKKLLVGYKQGYGIFCTCCNAEVSASTFEAHAGWSSRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMESNAQRNMNALAAGRIEGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKIFGPRTVIICDQCEKEYHVGCLKEHSMQNLEELPEGDWFCSTSCSHIHSSLVNLVASGENSLPDSILSLIKKKHDSGVEEKGADTGVEEKGAGTVVEEKGADAGVEGKGAGTVVEEKGADTGAEEKGADTGLEEKGAATGLEDKGADTGVEEKGDDTGVAPEIKWRVLNWKLVASGENKQLSDEYRQVLSKAVSIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFAGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATVSEYQGQGYFQCLFSCIERLLQSLSVKNLVLPAADEAESIWTNKFGFTKLEHDEINNYKKFYHMMIFQGTSVLQRPVPTLPSTSQEIV* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0848 1011 Pfam PHD-finger 563 604 IPR019787 -
Mal4g0848 1011 SMART PHD_3 562 603 IPR001965 -
Mal4g0848 1011 SMART PHD_3 653 706 IPR001965 -
Mal4g0848 1011 SUPERFAMILY FYVE/PHD zinc finger 647 703 IPR011011 -
Mal4g0848 1011 MobiDBLite consensus disorder prediction 33 84 - -
Mal4g0848 1011 ProSiteProfiles Zinc finger PHD-type profile. 560 605 IPR019787 -
Mal4g0848 1011 Pfam Tify domain binding domain 496 544 IPR032308 -
Mal4g0848 1011 Pfam Tify domain binding domain 271 326 IPR032308 -
Mal4g0848 1011 ProSitePatterns Zinc finger PHD-type signature. 563 602 IPR019786 -
Mal4g0848 1011 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 889 975 IPR016181 -
Mal4g0848 1011 PANTHER AUTOIMMUNE REGULATOR 1 999 - -
Mal4g0848 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 621 IPR013083 -
Mal4g0848 1011 CDD PHD1_AIRE 562 602 - -
Mal4g0848 1011 SUPERFAMILY FYVE/PHD zinc finger 550 603 IPR011011 -
Mal4g0848 1011 MobiDBLite consensus disorder prediction 779 817 - -
Mal4g0848 1011 Gene3D - 828 998 - -
Mal4g0848 1011 PANTHER AUTOIMMUNE REGULATOR 1 999 - -
Mal4g0848 1011 MobiDBLite consensus disorder prediction 778 817 - -
Mal4g0848 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 708 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0848 Mal-Chr4 10183617 10190528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0848 232 736 PHD Transcription Factor Family AT2G36720 42.593 4.62e-141 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal4g0848 TDBD 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0848 - - mtr:MTR_2g084425 1696.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0848 4 10183617 10190528 Mal4g0848 4 10183617 10190528 ECH