Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0708 ATGATGTCTCAAGAAGCAGTTTCTGTTCCTTCCAACCTCACAGGCAACTCAAACTCAAATTCAAACCCTAATCCTCCTAACCCTAATTCAAATTCAATTTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCAGATTCAGAAGTGATTGCTCTATCACCAAAATCACTGATGACAACAAACCGTTTCATCTGTGAAGTATGCAACAAAGGTTTCAAGAGAGACCAAAACCTGCAGCTACATCGACGAGGACACAATCTTCCATGGAAGCTCAAGCAAAGAAACAAGCAGGAGGTGGTAAGGAAGAAGGTGTATGTGTGTCCGGAGAAAAGCTGCGTTCACCATGACCCTAGTAGAGCTTTAGGTGACTTAACAGGGATAAAAAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGCTCTAAGATATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAAAGAGTATAGATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCTCAACTCATAGAGCCTTTTGTGAATCCTTAGTGGAAAGAAATGCAAGAATAGCTTCAGTTCCAGCAGTTTTTGGAAACAATCTTTTGATCAATACTCAAGCACCAAGAAATATTCCTCATGGTTTATTTGGGCTTAATCAAGAATATAGTGGGCCAGGGCCAGAAACATTCATGGGAAATTTTCCAAATAATAACATCCCTCATCATAGTTATCTTCCAAATTCTAGTGCATTCTCATCATCAGGAGCAAACTCTGAATTAGAATTAGTCCACACTTTTGGTTCATTACCTCAAGGACAATGGATGAATTACCGATACAATGATCAACATGCAGAAACATCATTTACAAGTAGTGGGGTTCTAAAGCTAGAACAACAACAAGAAGGAGACAAAATGCATGATTTGTCTCATTTGTACTCTCAGAACCAATTACAAGGATGTTCAAGTCACGTGTCAACAATGCAAAATACAACTACAAAGGTTATGATCAATGCAGGAAATTTGAATGAAGATGAGTTGAGCTTAACAAGAGATTTTCTTGGTGTTGGAGATGACTCATTGAAGAGAACATTGTTGCAACAAGAAGTGATCCCTAGGTTCAATCCAATAGGATCTGTCTCGAACATGCAAATTTGTATAACTTGTCGACATGGGGGCACTGGCTGGCGGATATTGTAA 1227 0.3945 MMSQEAVSVPSNLTGNSNSNSNPNPPNPNSNSISVKRKRSLPGTPDPDSEVIALSPKSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKQEVVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKIYAVQSDWKAHSKICGTKEYRCDCGTLFSRKDSFSTHRAFCESLVERNARIASVPAVFGNNLLINTQAPRNIPHGLFGLNQEYSGPGPETFMGNFPNNNIPHHSYLPNSSAFSSSGANSELELVHTFGSLPQGQWMNYRYNDQHAETSFTSSGVLKLEQQQEGDKMHDLSHLYSQNQLQGCSSHVSTMQNTTTKVMINAGNLNEDELSLTRDFLGVGDDSLKRTLLQQEVIPRFNPIGSVSNMQICITCRHGGTGWRIL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0708 408 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Mal4g0708 408 Gene3D Classic Zinc Finger 120 199 - -
Mal4g0708 408 Gene3D Classic Zinc Finger 43 118 - -
Mal4g0708 408 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 20 335 - -
Mal4g0708 408 SMART c2h2final6 142 162 IPR013087 -
Mal4g0708 408 SMART c2h2final6 107 137 IPR013087 -
Mal4g0708 408 SMART c2h2final6 65 87 IPR013087 -
Mal4g0708 408 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Mal4g0708 408 MobiDBLite consensus disorder prediction 1 38 - -
Mal4g0708 408 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Mal4g0708 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Mal4g0708 408 MobiDBLite consensus disorder prediction 1 50 - -
Mal4g0708 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0708 Mal-Chr4 7777541 7780023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0708 32 225 IDZ Gene Family AT5G03150 71.287 9.86e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0708 zf-C2H2_jaz 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0708 K25870 - gmx:100815213 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0708 4 7777541 7780023 Mal7g2121 7 75514087 75516305 PCT