Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0688 ATGCCACCAAAGCTTGATCCATCTCAGATCACCGAAGTGAAGGTCCGAATCACCGGCGGCGAGGTGGGTGCAGCAAGTTCTCTCGCCCCGAAAATAGGACCTCTCGGTCTCTCCCCTAAAAAAATAGGAGAAGACATTGCTAAGGTGACTGCCAAAGATTGGAAGGGTATAAGGGTTACAGCCAAGCTCATGGTGCAAAATCGTCAGGCGACGATTGAGGTGGTTCCTTCAGCGTCTGCACTTGTCATCAAAGCGTTGAAAGAGCCCGAACGTGACCGTAAGAAGACCAAGAATATCAACCACAATGGAGACATATCTCTTGAGGATGTCATTGGCATTGCTAGGGTTATGATGCCGAGATCGATGGCGAAGAAACTTTCCGGTACTGTTAAGGAGGTTCTTGGTACATGTGTGTCTGTTGGGTGTACCGTGGATGGCAAGGATGCTAGGGACTTGCAGCAGGAAATTAATGAAGGAAAGGTTGAAATCGCTGTGTTTTAA 501 0.483 MPPKLDPSQITEVKVRITGGEVGAASSLAPKIGPLGLSPKKIGEDIAKVTAKDWKGIRVTAKLMVQNRQATIEVVPSASALVIKALKEPERDRKKTKNINHNGDISLEDVIGIARVMMPRSMAKKLSGTVKEVLGTCVSVGCTVDGKDARDLQQEINEGKVEIAVF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0688 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Mal4g0688 166 Gene3D - 1 81 IPR036796 -
Mal4g0688 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Mal4g0688 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3 1 164 - -
Mal4g0688 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mal4g0688 166 Gene3D - 82 164 IPR036769 -
Mal4g0688 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 147 IPR036769 -
Mal4g0688 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Mal4g0688 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mal4g0688 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mal4g0688 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Mal4g0688 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 164 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0688 Mal-Chr4 7501219 7501719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0688 1 163 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 80.368 8.30e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0688 K02870 - twl:119984749 275.789