Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0674 ATGCCTGAGGAAATTTCGAATATGAAGGGCTCTTGGTTTTTCGACAAGAATTTTAATGGTTTGTCTGATGAGACTTTCGATGATCTCAAGTTTTTCGATTTTCCATTGGAAGATGTGGACGCCAATACTGCTGAAGAAGATTGGAGTGCTCTTGGAGAGCCGTGTTTTGATGTTTTTTCAGTGACCCCAGCAGTATTATGTGGTAAAATAAAAAATGAAAATCCCCAACTCGGGGAAGGCTTCTCTGCTCCTTTTAATGACATTTCCCCAATAATAAAAGAAGCGGCAAGAACTGCTCGACCAACATATGGAAAAACTATTCCCAACCAGAATGTCCCTTACTATGAAAAAAAAGCTGTGCTTCAATACAGCCCGGTTTCTGTTTTTGAAGGCAGTAGTGCTTCCTCAGTTGAGAATTTCAGCTTTGATCTGCCTGTCATTCCAGTAAAGCGTCCTCGAAGTAAACGCCGGCGTCCTTCAAGCTTAAATCCTGTATTCTCAATTTCTTTCATTGCTACCTCACGGGCTTTTCAAAAATATCAGAAGGCACCTGCCTCCGAGTCAGATTTAAACAGAATAAAGAAACAGAGAAAAAGGGACCTCTCCATGCTCTCGGGTGATGTTGAAATGAAGGGATCCTCATCACAAGAGCCAGTTGTCATGAGAAAGTGCACACATTGCGAGGTCACAGAGACTCCGCAATGGAGAGAGGGACCCAACGGTCCCAAAACGCTCTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTATCCTGAATATCGGCCTGCGAACAGCCCCACTTTTGTAGCATCAGTGCACTCAAACAGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCATCAAAGAAGGTGTTAGGGGCCGTTCTAAGTTGGATTCATCAAATGTTCCCGGAGATTCTGTAGGACCATGTTATCCTGGATCTTTTTGA 957 0.4451 MPEEISNMKGSWFFDKNFNGLSDETFDDLKFFDFPLEDVDANTAEEDWSALGEPCFDVFSVTPAVLCGKIKNENPQLGEGFSAPFNDISPIIKEAARTARPTYGKTIPNQNVPYYEKKAVLQYSPVSVFEGSSASSVENFSFDLPVIPVKRPRSKRRRPSSLNPVFSISFIATSRAFQKYQKAPASESDLNRIKKQRKRDLSMLSGDVEMKGSSSQEPVVMRKCTHCEVTETPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVASVHSNSHKKVLEMRGVVIKEGVRGRSKLDSSNVPGDSVGPCYPGSF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0674 318 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Mal4g0674 318 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Mal4g0674 318 ProSiteProfiles GATA-type zinc finger domain profile. 222 254 IPR000679 GO:0006355|GO:0043565
Mal4g0674 318 MobiDBLite consensus disorder prediction 297 318 - -
Mal4g0674 318 Gene3D - 220 298 IPR013088 GO:0006355|GO:0008270
Mal4g0674 318 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Mal4g0674 318 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Mal4g0674 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 280 - -
Mal4g0674 318 PANTHER GATA TRANSCRIPTION FACTOR 26 287 - -
Mal4g0674 318 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0674 Mal-Chr4 7269581 7274404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0674 15 286 C2C2-Gata Transcription Factor Family AT1G08010 42.215 1.33e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal4g0674 GATA 3.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0674 - - aprc:113853859 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0674 4 7269581 7274404 Mal7g2083 7 74591353 74593989 PCT