Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0587 ATGGTTCAAGAAGAAGTACGAAAAGGACCATGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTTGGATTATTTGGAGACAGAAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGTAGGTTAAGGTGGGTTAATTACCTTCATCCTGGTCTCAAAAGAGGTAAAATGACACCTCATGAAGAACGTCTTGTCCTTGAACTTCAATCCAAATGGGGAAATAGGTGGTCGCGAATTGCTCGGAAGTTACCTGGACGAACAGATAATGAGATCAAGAATTACTGGAGAACTCACATGAGGAAGAATGCTCAGGACAAAAAGAGAGGATCCAATCCATCCACAGAACACCATGCAATGAATTCACATGCTTCCAAAGATGCAGGGGAAGTAAGTTTTTATGACACAGGAGGATCATCAACATCAACACAAGTTAAACTAATAGGAGAAGAGCATGAACAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTATCAGAAGAGAATAGTCTGCAGAATGAAGAGGGATGCAACAATAATAGTAACATATCTTGTCTACCATTACCAATGACTTCATCATCATGGGAGTATAATAATTCCTCAGACTCACTATGGGTGATGGGTGAAGAAAGCATGTTATTCCCAATGGCTCCAATGAGTGATGACCCTTATTTTTCTTGCTATGCTAATTACTAA 720 0.3861 MVQEEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKNAQDKKRGSNPSTEHHAMNSHASKDAGEVSFYDTGGSSTSTQVKLIGEEHEQEISMDDIWKDIDLSEENSLQNEEGCNNNSNISCLPLPMTSSSWEYNNSSDSLWVMGEESMLFPMAPMSDDPYFSCYANY* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0587 239 Gene3D - 8 60 - -
Mal4g0587 239 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 229 - -
Mal4g0587 239 Gene3D - 63 135 - -
Mal4g0587 239 MobiDBLite consensus disorder prediction 106 143 - -
Mal4g0587 239 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Mal4g0587 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Mal4g0587 239 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Mal4g0587 239 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Mal4g0587 239 CDD SANT 63 106 IPR001005 -
Mal4g0587 239 CDD SANT 10 55 IPR001005 -
Mal4g0587 239 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Mal4g0587 239 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Mal4g0587 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Mal4g0587 239 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 229 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mal4g0587 239 SMART sant 60 108 IPR001005 -
Mal4g0587 239 SMART sant 7 57 IPR001005 -
Mal4g0587 239 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0587 Mal-Chr4 5872881 5873921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0587 1 215 MYB Transcription Factor Family AT5G59780 61.468 6.53e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal4g0587 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0587 K09422 - vvi:100260318 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0587 4 5872881 5873921 Mal4g0587 4 5872881 5873921 ECH
Mal7g2223 7 79340017 79341470 Mal4g0587 4 5872881 5873921 PCT