Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0581 ATGCTACTACCCAAAGTTGGTGAAAGTGAAGAAACCAATCCTTTCAAAGAATGTGGTTTTAAATGCAAAACATGCAACAAAGAATTCTCTTCTTTTCAAGCTTTAGGTGGTCATAGAGCAAGTCACAAGAGACCAAAACTCATGCACAAGTTACCAAACATGAAACCAAAGATGCATCCATGTCCAATTTGTGGGATTGAGTTTTCTATTGGACAAGCTCTTGGTGGCCACATGAGAAAGCATAATAAGTTTCCCATTTTCAAGAAATCAAAAGATCATTGTGAAAGGTTGAATTTTTGTTTGGACTTGAACTTGACACCGATAGAGAATGGTATTGCTTAG 342 0.3684 MLLPKVGESEETNPFKECGFKCKTCNKEFSSFQALGGHRASHKRPKLMHKLPNMKPKMHPCPICGIEFSIGQALGGHMRKHNKFPIFKKSKDHCERLNFCLDLNLTPIENGIA* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0581 113 Pfam C2H2-type zinc finger 59 82 - -
Mal4g0581 113 Pfam C2H2-type zinc finger 20 45 - -
Mal4g0581 113 Gene3D Classic Zinc Finger 17 81 - -
Mal4g0581 113 PANTHER ZINC FINGER PROTEIN ZAT5 1 110 - -
Mal4g0581 113 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Mal4g0581 113 SMART c2h2final6 20 42 IPR013087 -
Mal4g0581 113 SMART c2h2final6 59 81 IPR013087 -
Mal4g0581 113 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 110 - -
Mal4g0581 113 SUPERFAMILY beta-beta-alpha zinc fingers 20 81 IPR036236 -
Mal4g0581 113 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Mal4g0581 113 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Mal4g0581 113 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0581 Mal-Chr4 5780119 5780460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0581 13 110 C2H2 Transcription Factor Family AT2G28710 51.695 1.62e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g0581 zf-C2H2_6 2.4e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0581 4 5780119 5780460 Mal7g2230 7 79458761 79459174 PCT