Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0579 ATGTCTCAACGAATCGGAGCAAAACTATTTGTCAGCAGACTATCGTTTTACACTACACAACAACAATTCGAGTCATTGTTCTCACCATTCGGAGCACTTACCGAAGCTTATCTTGTTATGGACCCAAAAACTCATAGGCCTAAAGGTTTTGGTTTTGTCTCATACAAATCTGAAATGGAAGCTGAAAAGGCTAGGAAAGCGTTGAATGGAAAGATAGTTGATGGAAGGCTGATTTTCGTGGAACATGCAAAACCGAAGGACTCGTCCTGA 270 0.4111 MSQRIGAKLFVSRLSFYTTQQQFESLFSPFGALTEAYLVMDPKTHRPKGFGFVSYKSEMEAEKARKALNGKIVDGRLIFVEHAKPKDSS* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0579 89 Gene3D - 2 89 IPR012677 -
Mal4g0579 89 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mal4g0579 89 PANTHER BNAA02G06700D PROTEIN 4 86 - -
Mal4g0579 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mal4g0579 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mal4g0579 89 PANTHER TRANSFORMER-2-RELATED 4 86 - -
Mal4g0579 89 SUPERFAMILY RNA-binding domain, RBD 7 87 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0579 Mal-Chr4 5772204 5774048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0579 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 40.789 1.32e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0579 K13195 - gmx:100781760 124.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0579 4 5772204 5774048 Mal4g0579 4 5772204 5774048 ECH