Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0561 ATGAAACTTTTGAACCTTTCCCACCCAAACCCATTTCCCTTTTCTTCTCAATCTCACACCCAATCCATGGAACAAGTTCACCTTGCCGTTGGTAAATCACTTCACAAAACCACCACTTTGCTTCAATGGACTTTCAACAACTTTCCCAACACAGAAATTGTTATTATTCATGTTTATCAACCTTCTCCTGTTATACCCACTTTATTGGGGAAAATGCCAGCTTCTCAAGCTAATCCTGAAGTGGTATCTGCTTTTAGAAGAGAGGAAAGAGAACAGACTTTGAGGTTTACTGATAAGTATTTGAGCATTTGCTTTGCGGCTAAGGTGAAGGCGAGCGTTATTGTAATGGAAGCTGACCAAATCCAAAAAGGAATTGTTGATTTGGTTGTTAGACATAATATTAGGAAGCTTGTCATTGGAGCGGCATCGGAAAATTTCATGAAAGTGAAAAGGAATTCTGGGAAAGCAAATTACACTTCCAAACATGCTCCCCCGTTCTGTGAAATATGGTTTATATATAAAGGCAGACATATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTTGTCTTCACATGCTCAACCAGAGATCGCAGCAACAGAAAGCTTGAGATGTAGATCTTTTCAGTATGGTAACAATGAACTTCCCCATTTGGAACATCTTCAACCAAATTCTGCTAGAACTACAGTATGTTCTGGAATTAGAAGCTTGGATCTGGGTGAAATCATAGAAACCGAAGCCACTAATTCATCCAAATCATCCAGTTGTAGCAGTTATTGTTCTCCGCAAAATTCTGCTGAGGTATATCTAGATACGAATTCAGAGGTCATGGAAGAAAGAATTAACAGTCAACTTATTGAAACCAAAAGAGAAGCTGAGGCAGCAACAGATGAGTCCTTTGCAGAACTATTAAAGCGCAGGAGGTCGGAAGTTGAAGCCATGGAGGCCATAAGGAAGGTCAAATTGTATGAATCTGCCCATGCACATGAGGCGGAGCTCAGGAAAGAGGCCGAGGATGCACTTAGAGTTACCGTACTAGAACAACAAAAAATCTTAGAAGAGAGTGAAGATATTTCTGGTAATCTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGCCGTGTTAAGGAAACAACCCGTAGGCGAGATGAAGCTTCACACGAGCTCTTGCTAATTCAAACATCCATATCAACCTTGTGGCAAGAAAGGCAGCAGATCCGGAGACAGAAAATGGAAGCCCTCCGCTGGCTAGAACGGTGGAAAAGTCGTGGACAAGTCGGAGTAGCTCATTACAACGGGGTTATAGGGTTTGCTGAAGAACTTCCTGAGTTAGCAGAATTTTCATTATCAGATATTGAAAATGCTACATGTAATTTTTCCAAGAGCTTTGAAATTGCGCAAGGTGGATTTGGTTGTATATATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAAGAAGTTCCACCAACATAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATAGTATATGAGTACCTCCCTAACGGAACTCTTCAAAGCTACCTATTCCGAAAAAGTAACATTATCCCTTTGACATGGAATATCAGAGCACGAATGATTGCCGAAATTTCCAGTGCACTATGCTTCTTACATTCTTTTAAACCGGAAGCTATTATCCATGGTGATCTGAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGCGAATTCAGGTACAGCAGGCTTGTGACAGAGGAGTCTCTCTATAGTCCTAGTTTCCACTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACAGATCCTGAGTTTCAGCGAACTGGGGTACTAACACCCAAGTCTGACATCTACTCCTTTGGACTTATTATTTTGCAACTCCTCACTGGTAGGACCCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCTTTATCTGTGGCATCACGGTTGGTTGAACTGGGTTTGCAATGTTGTGCACAAAATTGCAGAAACAGACCAGAGTTAACACCTACTCTTGTGAGAGAATTGGAACAGTTACATGTTTCGGAAGAGAGACCTGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATTGCAGCAGATGGATTTACATATGAAGGGAATGCCATACGTGAATGGTTGGAAAATGGGCATGATACTTCTCCAATGACTAATTTAAAGCTGAGTCATTTGCTTCTCACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 2418 0.4119 MKLLNLSHPNPFPFSSQSHTQSMEQVHLAVGKSLHKTTTLLQWTFNNFPNTEIVIIHVYQPSPVIPTLLGKMPASQANPEVVSAFRREEREQTLRFTDKYLSICFAAKVKASVIVMEADQIQKGIVDLVVRHNIRKLVIGAASENFMKVKRNSGKANYTSKHAPPFCEIWFIYKGRHIWTREASETPCSLSSHAQPEIAATESLRCRSFQYGNNELPHLEHLQPNSARTTVCSGIRSLDLGEIIETEATNSSKSSSCSSYCSPQNSAEVYLDTNSEVMEERINSQLIETKREAEAATDESFAELLKRRRSEVEAMEAIRKVKLYESAHAHEAELRKEAEDALRVTVLEQQKILEESEDISGNLQMTMRNVALLDSRVKETTRRRDEASHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQVGVAHYNGVIGFAEELPELAEFSLSDIENATCNFSKSFEIAQGGFGCIYKGEMLGRTVAIKKFHQHNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQSYLFRKSNIIPLTWNIRARMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRYSRLVTEESLYSPSFHLSTEPKGAFTYTDPEFQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSAGEWPLSVASRLVELGLQCCAQNCRNRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGNAIREWLENGHDTSPMTNLKLSHLLLTPNHSIRLAIQDWLCKS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0561 805 ProSiteProfiles U-box domain profile. 734 805 IPR003613 GO:0004842|GO:0016567
Mal4g0561 805 Pfam U-box domain 735 804 IPR003613 GO:0004842|GO:0016567
Mal4g0561 805 Gene3D HUPs 19 151 IPR014729 -
Mal4g0561 805 CDD RING-Ubox_WDSUB1_like 739 780 - -
Mal4g0561 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 805 IPR013083 -
Mal4g0561 805 Gene3D Transferase(Phosphotransferase) domain 1 534 734 - -
Mal4g0561 805 SUPERFAMILY Protein kinase-like (PK-like) 445 721 IPR011009 -
Mal4g0561 805 Pfam Protein tyrosine and serine/threonine kinase 466 717 IPR001245 GO:0004672|GO:0006468
Mal4g0561 805 SMART Ubox_2 738 801 IPR003613 GO:0004842|GO:0016567
Mal4g0561 805 SUPERFAMILY RING/U-box 732 804 - -
Mal4g0561 805 Coils Coil 279 299 - -
Mal4g0561 805 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 42 147 - -
Mal4g0561 805 PANTHER OS02G0152300 PROTEIN 15 804 - -
Mal4g0561 805 PANTHER OS10G0100500 PROTEIN 15 804 - -
Mal4g0561 805 CDD STK_N 26 175 - -
Mal4g0561 805 Gene3D Phosphorylase Kinase; domain 1 438 533 - -
Mal4g0561 805 ProSiteProfiles Protein kinase domain profile. 461 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0561 Mal-Chr4 5511597 5516748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0561 24 802 U-box Gene Family AT2G45910 36.829 8.28e-173 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mal4g0561 PK_Tyr_Ser-Thr 1.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0561 - - gmx:100788846 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0561 4 5511597 5516748 Mal4g0561 4 5511597 5516748 ECH