Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0527 ATGAACTCGGAAACGCTACCCTCAACGACGTCGTTTTGGTGCTATAGCTGCACGCGTTTCATTCACCTCTCGAACCAAAACGACGTCGTTTGTCCTCACTGCCAAAACGGCTTCGTTGAAGAGATTCACGCCGGTCAATCTCCGGCGGTTTCTCTTTTCGCCGACGGAATTCAATCTTCCAGAAGACAAACCTCCCGCCGCAGACGTCGTAACGCCGGAAACTCCGGTGGAAGCCGTTCACCTTTCAATCCCGTAATCGTTCTTCGTGGACCTAGAGAAGACGCCGCTGCCGGAGGCGGTGGCGGCGGAGGAGTTGAGACCGAGGGGAGTAGTAGTAGCTTTGAATTATACTACGAAGACGGTAACGGCACCGATCTACGACCGCTTCCACCAAGCATGTCGGAGTTATTACTCGGTTCCGGTTTCGATCGGTTACTAGAGCAATTCTCTCAAATCGAAATCAACGGTTTCGGAAGATCGGAAAATCCACCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACGGTTGAAATCACCGACTCAGAAATCGAATCCGAAACTCACTGTGCAGTTTGCAAAGAAGCATTCGAGCTATGTTCAGAAGCGCGTAAGATGCCTTGTAATCATCTTTACCATTCCGATTGCATTCTGCCATGGCTTTCAATGCGAAACTCGTGTCCGGTGTGCCGGCACGAGTTACCGTCCGATCAAAACGCGTCGGAGAGTAGAATTTCCGGTCAGGTTGACGAAGAAGCAGTTGGATTAACGATATGGAGGTTACCGGGAGGTGGATTTGCTGTTGGAAGATTCGCCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGATTGTTTACACGGAGATGGATGGCGGTAACGGTAATGAATCAAACGAAGATTCTAGAAGAATTTCTTTGGCTGTGGGAAGTAATAGAGTTAGAGTTAGAGAGAGACGTGGAATTCGAAGAATTTTTCGGAATTTTTTGTCTTTTTTTGGGTCTGTTAATTTAAACCGTAGCTTTTCTGGTTCATTGTTTAGTAGAAGCTCAAGGAGAAGAAGTAGAACTTGGGTTGTAGAAGAATAA 1083 0.482 MNSETLPSTTSFWCYSCTRFIHLSNQNDVVCPHCQNGFVEEIHAGQSPAVSLFADGIQSSRRQTSRRRRRNAGNSGGSRSPFNPVIVLRGPREDAAAGGGGGGGVETEGSSSSFELYYEDGNGTDLRPLPPSMSELLLGSGFDRLLEQFSQIEINGFGRSENPPASKAAIESIPTVEITDSEIESETHCAVCKEAFELCSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNASESRISGQVDEEAVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPIVYTEMDGGNGNESNEDSRRISLAVGSNRVRVRERRGIRRIFRNFLSFFGSVNLNRSFSGSLFSRSSRRRSRTWVVEE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0527 360 Pfam Ring finger domain 188 230 IPR001841 -
Mal4g0527 360 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Mal4g0527 360 SMART ring_2 189 229 IPR001841 -
Mal4g0527 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Mal4g0527 360 CDD RING-H2_RNF126_like 189 230 - -
Mal4g0527 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 316 - -
Mal4g0527 360 PANTHER OS05G0110000 PROTEIN 8 316 - -
Mal4g0527 360 Pfam Protein of unknown function (DUF1117) 253 351 IPR010543 -
Mal4g0527 360 MobiDBLite consensus disorder prediction 92 111 - -
Mal4g0527 360 MobiDBLite consensus disorder prediction 53 85 - -
Mal4g0527 360 SUPERFAMILY RING/U-box 169 236 - -
Mal4g0527 360 Pfam zinc-ribbon 10 42 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0527 Mal-Chr4 5056591 5057673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0527 125 241 C3H Transcription Factor Family AT5G01980 42.735 3.39e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0527 - - aip:107612938 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0527 4 5056591 5057673 Mal4g0527 4 5056591 5057673 ECH
Mal4g0527 4 5056591 5057673 Mal7g2304 7 81115846 81116943 ECH
Mal3g1989 3 81893618 81894931 Mal4g0527 4 5056591 5057673 ECH
Mal4g0527 4 5056591 5057673 Mal7g2304 7 81115846 81116943 PCT