Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0516 ATGGAAGAATGTTTGTGTAACACCAACAACATATTTGATGAAGAGTTCCTCAGAGATATCCTGCATGAGACACCACAAGATCAATTCAGTGTCCCTATTGCAACAACTGACCTAGTCAATAATAACAATTCATCCATCAATATCTCATATTCAACTCAAACTCAACATGCTGCAGAAAAGCCAACAAACTCATTACCAATACCAACAACTTATATATTGTCTTATGACAAATCCACTACATTGTTACCACCAACTGAACAACACCATGATTCTTTGCCTTTGTCATCATCAAAGGCTAACCAAGGGTCGAATTTGAAGAAGACTCGAAACGCTTCTGAGACACTAGATCACATAATATCAGAGAGGAACAGAAGACAGGAACTGACAAGAAAGTTCATAGAACTTTCAGCATTTATACCTGGATTGAAGAAGATGGACAAGGTTCATGTACTAAGAGAAGCTATCAAGTACGTGAAACAACTTGAAGAACGTATGAAAGAACTCGAAGAAGACATCAAGAAGAAAGGTGCAGGATCAGTGATCCCCATAGTAAGATCTCATCTCCTCATTGACCATGACATTGCAATGGGTGAAATGAACACTGAAGAATTTTATGGGCACAAGGAATCACTTCCAGTAGTTGAAGCCAAAGTCCTAGGGAAAGAAGTGTTAATCAAGATTCATTGTTGGATGCAAAAGGGGATTGTGGTCAATATAATGTCCCAGCTTCAGCTTCAACTTCATCTCTCCATAACAACTTCCAATGTCTTGCCATTTGGAAATACTCTTGACATCACCATTATAGCTCAGATGGGTGACAAATACAGCTTGGCAGTGAAGGATCTAGTGAAAAAACTAAGAGTAGTGGCTACGTTGCAGGCATGTGATAATGTGCAACAATGA 903 0.3887 MEECLCNTNNIFDEEFLRDILHETPQDQFSVPIATTDLVNNNNSSINISYSTQTQHAAEKPTNSLPIPTTYILSYDKSTTLLPPTEQHHDSLPLSSSKANQGSNLKKTRNASETLDHIISERNRRQELTRKFIELSAFIPGLKKMDKVHVLREAIKYVKQLEERMKELEEDIKKKGAGSVIPIVRSHLLIDHDIAMGEMNTEEFYGHKESLPVVEAKVLGKEVLIKIHCWMQKGIVVNIMSQLQLQLHLSITTSNVLPFGNTLDITIIAQMGDKYSLAVKDLVKKLRVVATLQACDNVQQ* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0516 300 Coils Coil 151 178 - -
Mal4g0516 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 175 IPR036638 GO:0046983
Mal4g0516 300 Pfam Helix-loop-helix DNA-binding domain 117 162 IPR011598 GO:0046983
Mal4g0516 300 PANTHER BHLH TRANSCRIPTION FACTOR 1 297 - -
Mal4g0516 300 SMART finulus 118 167 IPR011598 GO:0046983
Mal4g0516 300 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 297 - -
Mal4g0516 300 MobiDBLite consensus disorder prediction 82 109 - -
Mal4g0516 300 MobiDBLite consensus disorder prediction 82 111 - -
Mal4g0516 300 Gene3D - 103 176 IPR036638 GO:0046983
Mal4g0516 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0516 Mal-Chr4 4952571 4953760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0516 108 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.889 3.31e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal4g0516 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0516 - - mtr:MTR_8g069740 390.578