Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0509 ATGAGAAAGCCAGAGGTTTGTAGTACTAAAAACAACATCAACAACATTAATAAGAAGAAACTTAGAAAAGGGTTGTGGTCACCAGAAGAAGATGAGAAACTTATGAACTATATGGTAAGAAATGGACAAGGATGTTGGAGTGATGTGGCAAGAAATGCTGGATTGGAAAGGTGTGGCAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACCACAAGAAGAGGAACTCATCACCCATTTCCATTCTCTACTTGGAAACAGATGGTCTCAAATAGCAGCAAGATTGCCAGGGAGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTTAAGAACTTGTCTTCAACCTCAACTAATGCAAGTGAGTCCTCACTTGAGCCTAACAAAGACCAGCTGAATATAGAAGGATCCTATATTTCTACACAACATGCAAATTACAACAATTATATGAATATGCCTATGTTCACTTCATCATCATCTCCATCACCATCAATATTGCAAAACACAATTTTCAATACCATGAATATTGATACCTTGCCTATGCTTGATCATGGTGGATACTTCAACACTACAATGCCATGCTTCTCATCACAAAGTGGATTTGAAATTAGTAAAGATTCTTATTTAGAAAATGTGAATATTGGAGTAGAAGGGGGTGTGGAGAATAAGTGCAAGAGAGAAACTAACAATAGTGATTATAATTTTGATGACATAAACAGTGTGCTTATTAATAATTGCAATATTATTGAAAGCAATAATAATAAAACTGAAAATAGGGGTGAGGTGGTGGAGAATTTATTTCAAGAACAATTCAACTTGGGAGAGTGGGATTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTTTCTTTTCTTGA 921 0.354 MRKPEVCSTKNNINNINKKKLRKGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSPQEEELITHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTSTNASESSLEPNKDQLNIEGSYISTQHANYNNYMNMPMFTSSSSPSPSILQNTIFNTMNIDTLPMLDHGGYFNTTMPCFSSQSGFEISKDSYLENVNIGVEGGVENKCKRETNNSDYNFDDINSVLINNCNIIESNNNKTENRGEVVENLFQEQFNLGEWDFEELMKDVSSFFFS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0509 306 CDD SANT 26 70 IPR001005 -
Mal4g0509 306 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Mal4g0509 306 SMART sant 22 72 IPR001005 -
Mal4g0509 306 SMART sant 75 123 IPR001005 -
Mal4g0509 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Mal4g0509 306 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mal4g0509 306 Gene3D - 23 75 - -
Mal4g0509 306 CDD SANT 78 118 IPR001005 -
Mal4g0509 306 PANTHER MYB DOMAIN PROTEIN 55 1 305 - -
Mal4g0509 306 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mal4g0509 306 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Mal4g0509 306 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Mal4g0509 306 Gene3D - 77 148 - -
Mal4g0509 306 PANTHER MYB TRANSCRIPTION FACTOR 1 305 - -
Mal4g0509 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0509 Mal-Chr4 4875639 4878329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0509 1 305 MYB Transcription Factor Family AT5G12870 47.484 5.03e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal4g0509 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0509 K09422 - gmx:100785810 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0509 4 4875639 4878329 Mal7g2340 7 81674380 81676850 PCT