LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g0507	ATGGCAACAACCTATCACCAACCAGCTTCCCTCGAAGAAGTTCGAACCCTATGGATAGGAGATTTACAATACTGGGTAGACGAAAATTATCTCACTCACTGTTTCTCCCACACCGGCGAAGTTATCTCTATCAAAATCATCCGCAACAAAATCACCGGCCAACCCGAAGGTTACGGTTTCATCGAATTCATCTCCCACACCGCCGCCGAACGCGTCCTTCAAACCTACAACGGCACTCAAATGCCTGGAACCGAACAAACCTTCCGTTTAAACTGGGCTTCCTTCGGTATCGGTGAACGCCGCCCCGATGCCGGTCCCGATCATTCGATTTTTGTTGGTGATTTGGCGCCGGATGTAACGGATTATTTGCTTCAAGAGACTTTTAGGACTCATTATGGGAGTGTTCGTGGAGCTAAGGTTGTGACTGATCCTAATACTGGGAGGTCTAAGGGTTATGGGTTTGTGAAATTTAGTGATGAGAGTGAAAGGAATCGGGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGGCCGATGAGGATTAGTGCTGCTACCCCGAAGAAAACTACGGGGTATCAGCAGAATCCTTATGCGGCTGTTGGGGTTGTTGCTCCTGCTGTTGTTGCTCCTGCTCCTGTTCCTAAAGCAATATATCCAGTGCCTGCATACACCGCCCCAGTGAATACAGTTCCACCAGAATATGACGTCAACAATACTACCATTTATGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTTCATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCAAACTGCTAGACAGGACGTACCTGGTGGATGGGGACAACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAACCGGGTTATGAAGCTTATGCATATGGGGCCGCTCAGGATCCTTCGATGTATGCATATGCTGGATATACTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCCCAAGACGTATCGGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCAATGCCTGATGTTGATAAGTTAAACGCTGCATATCTCTCGGTACACGGAAATGCCATCTTAGGGCGGTCCCTCTGGCACAAAAGTCATTCCTCATCCTTACAACAGCAAGCTTAG	1305	0.4728	MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFISHTAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVGVVAPAVVAPAPVPKAIYPVPAYTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKIIGQQVIRVSWGRPQTARQDVPGGWGQQMDPSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYTGYAQYPQQVEGAQDVSAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKSHSSSLQQQA*	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g0507	434	CDD	RRM2_SECp43_like	107	186	-	-
	Mal4g0507	434	Gene3D	-	97	199	IPR012677	-
	Mal4g0507	434	SUPERFAMILY	RNA-binding domain, RBD	6	83	IPR035979	GO:0003676
	Mal4g0507	434	SUPERFAMILY	RNA-binding domain, RBD	101	198	IPR035979	GO:0003676
	Mal4g0507	434	PANTHER	POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED	6	371	-	-
	Mal4g0507	434	SUPERFAMILY	RNA-binding domain, RBD	219	340	IPR035979	GO:0003676
	Mal4g0507	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	108	187	IPR000504	GO:0003723
	Mal4g0507	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	240	312	IPR000504	GO:0003723
	Mal4g0507	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	175	IPR000504	GO:0003723
	Mal4g0507	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	242	306	IPR000504	GO:0003723
	Mal4g0507	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	17	85	IPR000504	GO:0003723
	Mal4g0507	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	15	95	IPR000504	GO:0003723
	Mal4g0507	434	Gene3D	-	14	94	IPR012677	-
	Mal4g0507	434	CDD	RRM1_SECp43_like	16	96	-	-
	Mal4g0507	434	SMART	rrm1_1	109	183	IPR000504	GO:0003723
	Mal4g0507	434	SMART	rrm1_1	16	91	IPR000504	GO:0003723
	Mal4g0507	434	SMART	rrm1_1	241	308	IPR000504	GO:0003723
	Mal4g0507	434	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	6	371	-	-
	Mal4g0507	434	Gene3D	-	227	320	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g0507	Mal-Chr4	4829035	4833769	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g0507	16	336	Eukaryotic Initiation Factors Gene Family	AT1G22760	23.284	1.18e-17	83.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g0507	-		-	cam:101496574	779.63