Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0466 ATGGATTCCGATGATAATATGCACGATGCCAACGATGTTGAATCCATCGATGACGATTTCTATAGTGGTGAAACCGAAGATGCTCCTATGGATTACTACAGCGACTACGATGATGATAATAATGATGCTAATTCTGATGATGATTACTTTGATGATGCTGATGATTCTGACCCCGCTCAGTCTCGGAGAACAGAGCAAAATTTTATCATATTGAAAGAATCAGATATCCGGGAACGGCAGGAAGATGATATCAAGAGAGTAGCAGCAGTTCTTTCCATACCGCCAGTTGCTGCAAGCATCCTACTTCGTCATTATCGTTGGAGTGTCAATACTGTTAATGATGCTTGGTTTGCTGACGAAGATCGAGTCCGAAGAACAGTTGGCTTGTTGGAGAAACCAGTTTATGAGAATCCTGATGCCAAAGAGCTCACTTGCGGCATCTGTTTTGAAGCTTATCCTCCTTCTAAGATTCAAACTGCTTCTTGCGGTCATCCATACTGTTTTTCTTGCTGGGGAGGATATATTGGCACTTCAATCAATGATGGTCCCGGATGCTTGATGCTGAAATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCAAAATATGATTAATCTGTTAGCATCTGATGAAGATAGAGAGAAGTATGACCGTTACCTTATTAGATCTTACATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGTGGTGAAAATTCCGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGCATTGCACCGAAGAGGCTCACCGTCCTGTGGATTGTGACACAGTGTCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCTCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACGGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCTAGCAACCAATCTTCGAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTGTTCATATGGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACCTATGCATATGGATACTATTTACCTGAGCATGAACATGCTAAAAAGCAGTTCTTCGAGTACTTGCAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGAAGGCCCGTCTAAAGATTTCAATGATTTTCGCACAAAACTAGCTGGATTGACCAGTGTGACTAGAAACTTCTTTGAGAATTTGGTTAATGCATTAGAAAATGGTTTATCTGATGTGGATAGCAACGGAGCTGCTCCTTCCAGCAAAGCAACGACTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGGGGAAGAGGAAAGGGGACGAATCGAGCTACCATGTCCAGCAGAATAACTGATGATAATAGCTGGTATTGTGATCAATGTACCTATGCAAATGTGAGATCTGCCACCGCATGCGCAATGTGCAATACAGAGCGTTGA 1791 0.4299 MDSDDNMHDANDVESIDDDFYSGETEDAPMDYYSDYDDDNNDANSDDDYFDDADDSDPAQSRRTEQNFIILKESDIRERQEDDIKRVAAVLSIPPVAASILLRHYRWSVNTVNDAWFADEDRVRRTVGLLEKPVYENPDAKELTCGICFEAYPPSKIQTASCGHPYCFSCWGGYIGTSINDGPGCLMLKCPDPACGAAVDQNMINLLASDEDREKYDRYLIRSYIEDNKKTKWCPAPGCEHAVNFDAGGENSDVSCLCSYSFCWHCTEEAHRPVDCDTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHMEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGEGPSKDFNDFRTKLAGLTSVTRNFFENLVNALENGLSDVDSNGAAPSSKATTSKNAAGSSKGRGGRGKGTNRATMSSRITDDNSWYCDQCTYANVRSATACAMCNTER* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0466 596 CDD RING-HC_RBR_TRIAD1_like 145 195 - -
Mal4g0466 596 MobiDBLite consensus disorder prediction 1 67 - -
Mal4g0466 596 SMART ibrneu5 289 350 IPR002867 -
Mal4g0466 596 SMART ibrneu5 214 276 IPR002867 -
Mal4g0466 596 ProSiteProfiles Zinc finger RanBP2 type profile. 569 596 IPR001876 -
Mal4g0466 596 MobiDBLite consensus disorder prediction 1 15 - -
Mal4g0466 596 MobiDBLite consensus disorder prediction 16 54 - -
Mal4g0466 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 225 IPR013083 -
Mal4g0466 596 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 544 - -
Mal4g0466 596 Pfam Ariadne domain 363 524 IPR045840 -
Mal4g0466 596 Gene3D - 272 527 - -
Mal4g0466 596 SUPERFAMILY RING/U-box 295 343 - -
Mal4g0466 596 SUPERFAMILY Ran binding protein zinc finger-like 570 596 IPR036443 -
Mal4g0466 596 Pfam IBR domain, a half RING-finger domain 293 341 IPR002867 -
Mal4g0466 596 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 -
Mal4g0466 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 544 IPR031127 GO:0004842|GO:0016567
Mal4g0466 596 MobiDBLite consensus disorder prediction 528 564 - -
Mal4g0466 596 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
Mal4g0466 596 ProSiteProfiles Zinc finger RING-type profile. 145 191 IPR001841 -
Mal4g0466 596 MobiDBLite consensus disorder prediction 528 547 - -
Mal4g0466 596 Gene3D - 567 596 - -
Mal4g0466 596 SUPERFAMILY RING/U-box 140 226 - -
Mal4g0466 596 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Mal4g0466 596 SMART zf_4 571 595 IPR001876 -
Mal4g0466 596 SUPERFAMILY RING/U-box 214 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0466 Mal-Chr4 4098243 4105786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0466 17 596 ARIADNE family AT1G65430 68.385 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0466 K11968 - gmx:100810427 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0466 4 4098243 4105786 Mal4g0466 4 4098243 4105786 ECH
Mal4g0466 4 4098243 4105786 Mal7g2405 7 84538028 84545234 PCT