Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0450 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGACATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAGCACCAGAGGCTTCATCTTCAGTCTCTCTCTAACAAGCTTCCTAGATGTGACATATGCCAAGACAAGACAGCTTTCATATTTTGTGTCGAAGACAGGGCACTCTTCTGTGAGAATTGTGACGAATCGATTCATTTACCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCAACCGGTATCCGAGTGGCCATGAAATCTAACTGCACCAAAGACGACGAAAAAACTCACTTGGAACCACCTAAGAGGAATACACATCAAATTTCTCTTGAAACTCCTTCTCAACAAGTGCCTGACTTTTCACCCTCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGACTTTAATTCCCATGACAAAAAGGATCCCATGCAATTTGGAGAGATGGAATGGTTCACAGAGGAGGGTCTTTTTGGTGAAGGCTTTACTCAAGAAGCTATGGCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTCATGCTAGCAACAATTATTCATCACACAGAAACTCCAAGTCACACATGTCTAACAAAAAGCCTAGAATTGAACTCATACGTGATTATGATTATGATGATGAAGATGAGTACTTCACAGTGCCTGATCTTGGCTGA 732 0.4262 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLHLQSLSNKLPRCDICQDKTAFIFCVEDRALFCENCDESIHLPGSLSANHQRFLATGIRVAMKSNCTKDDEKTHLEPPKRNTHQISLETPSQQVPDFSPSWGVDDLLELADFNSHDKKDPMQFGEMEWFTEEGLFGEGFTQEAMAAAEVPQLPVTHASNNYSSHRNSKSHMSNKKPRIELIRDYDYDDEDEYFTVPDLG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0450 243 CDD Bbox1_BBX-like 57 98 - -
Mal4g0450 243 Gene3D Classic Zinc Finger 1 90 - -
Mal4g0450 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mal4g0450 243 SMART bboxneu5 52 99 IPR000315 GO:0008270
Mal4g0450 243 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 243 - -
Mal4g0450 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mal4g0450 243 CDD Bbox1_BBX-like 5 47 - -
Mal4g0450 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Mal4g0450 243 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Mal4g0450 243 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0450 Mal-Chr4 3937302 3939040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0450 1 161 Orphan Transcription Factor Family AT1G06040 62.353 7.03e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal4g0450 zf-B_box 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0450 - - vun:114183169 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0450 4 3937302 3939040 Mal4g0450 4 3937302 3939040 ECH
Mal4g0450 4 3937302 3939040 Mal7g2427 7 84777460 84779564 PCT