Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0421 ATGTCAATCTATGACTCATCACTCTTTTCATTTTTTTCTTCTTCTTCTTCTTTAAGCTTACATCTATGCTTTTTCAAGTTTCATCTCCTCCCACTAACACATGCACAGCTTCTACTTCTAAATCCACCCAATTTCCAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTGCCAGAAAAATGCCACAACAGTAAAGCACTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGAGTGGCTCATCACAATCAGGTCAAATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAACAATATGGGATGTCTCATTGGGGCATCATCTATTGGGAGCCCAAATCTCACCGTCCGTCCTCCACCTGTGGATCACAGCCAATCACTTGCGCATATTGCACTCCACTATGCTGATCCAAGCTACAGTGGCCTACTTTCTGCTTCCCATGCCCAACAATATAAGGCTTATGGCATCATGTCATCAAATTCTGACCAGCTTCTTCATGGCCAGCTAATGGAAACTGCTTCTGTCCGAATTCCCTTGCCATCTGATATGGAGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGGCGAAGACAGTGTCGAGCAAAGCTTGAAGCACATAACAAACTCATTAAGGATCGTAAACCATATCTTCACGAGTCCCGTCATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGCTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGCCAAACCATGGCCAAAATGTTTCTACCGGCTATACTTGTTTGAATTTGAATGGGAATATGCCAGAATCTAAAATGCATGATCAGGTTGAAAACTACAGAGACGGTGCTTCTGCTTCTGATGTCACATATGGGTCTAATAGGGATGAAATGTTTAAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAACATGCAGGATTATACAGCTGACAAGAGTGTTGGTGGGAATCAACGCCGACTATCGGTTCTCATGTGA 1092 0.4258 MSIYDSSLFSFFSSSSSLSLHLCFFKFHLLPLTHAQLLLLNPPNFQVQQTSMSKSLSFKVEALPEKCHNSKALSFQFQEQDSSSTQSSGSSQSGQIPFQHCSSTGSTFKRTEENNMGCLIGASSIGSPNLTVRPPPVDHSQSLAHIALHYADPSYSGLLSASHAQQYKAYGIMSSNSDQLLHGQLMETASVRIPLPSDMEEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHGQNVSTGYTCLNLNGNMPESKMHDQVENYRDGASASDVTYGSNRDEMFKQQQELEFRLCSYPSSQTGRNMQDYTADKSVGGNQRRLSVLM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0421 363 MobiDBLite consensus disorder prediction 334 354 - -
Mal4g0421 363 ProSiteProfiles NF-YA/HAP2 family profile. 200 260 IPR001289 GO:0003700|GO:0006355
Mal4g0421 363 MobiDBLite consensus disorder prediction 334 363 - -
Mal4g0421 363 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 44 328 IPR001289 GO:0003700|GO:0006355
Mal4g0421 363 Gene3D - 200 261 - -
Mal4g0421 363 MobiDBLite consensus disorder prediction 82 104 - -
Mal4g0421 363 ProSitePatterns NF-YA/HAP2 subunit signature. 205 225 IPR018362 GO:0003677|GO:0016602
Mal4g0421 363 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 44 328 - -
Mal4g0421 363 PRINTS CCAAT-binding transcription factor subunit B signature 203 225 IPR001289 GO:0003700|GO:0006355
Mal4g0421 363 PRINTS CCAAT-binding transcription factor subunit B signature 234 257 IPR001289 GO:0003700|GO:0006355
Mal4g0421 363 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 202 257 IPR001289 GO:0003700|GO:0006355
Mal4g0421 363 SMART cbf3 199 260 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0421 Mal-Chr4 3646759 3650010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0421 52 343 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.677 1.08e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mal4g0421 CBFB_NFYA 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0421 K08064 - gmx:100500765 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0421 4 3646759 3650010 Mal4g0421 4 3646759 3650010 ECH
Mal4g0421 4 3646759 3650010 Mal5g0679 5 11361524 11363706 PCT