Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0420 ATGGAAGGTCGAAGTCGCACCGTGGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACCGGAATCATCAAAGCCCTAACCGTTGATGTTGAAGAATTCTACAGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTGTATGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCTGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAGGAAAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCAAGGTTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATTAATGAAATGCCAACAGTATTTGAAGTTGTTACTGGTGCAGCAAAAAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAGTCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGCAGACAGCCAAAGGCGGCATTACAACCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGAGAAGCTACATGTGGGGCATGCGGTGATAGTAATGGTGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCGCGTGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAATAACAAGAGAGCTCGCTAG 753 0.4369 MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEEFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINEMPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRAR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0420 250 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 250 - -
Mal4g0420 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Mal4g0420 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Mal4g0420 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Mal4g0420 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Mal4g0420 250 MobiDBLite consensus disorder prediction 180 194 - -
Mal4g0420 250 SMART PHD_3 196 244 IPR001965 -
Mal4g0420 250 MobiDBLite consensus disorder prediction 141 173 - -
Mal4g0420 250 CDD PHD_AL_plant 197 246 IPR044104 -
Mal4g0420 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Mal4g0420 250 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Mal4g0420 250 Pfam PHD-finger 197 245 IPR019787 -
Mal4g0420 250 MobiDBLite consensus disorder prediction 141 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0420 Mal-Chr4 3629007 3632707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0420 6 250 Alfin-like Transcription Factor Family AT3G42790 73.061 2.25e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mal4g0420 Alfin 4.7e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0420 - - gmx:100170700 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0678 5 11273119 11277582 Mal4g0420 4 3629007 3632707 ECH
Mal4g0420 4 3629007 3632707 Mal4g0420 4 3629007 3632707 ECH
Mal4g0420 4 3629007 3632707 Mal5g0678 5 11273119 11277582 PCT