Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0413 ATGGGAAATCAGAAACAAAAGTGGACTGCTGAAGAAGAAGAAGCTCTGACAAAAGGGGTTAACAAATACGGTGCTGGAAAATGGAAGCATATTCTCAAAGACCCTGAGCTCAGTCCTAAACTTGCAAGCCGTTCCAACATTGATCTTAAGGATAAATGGCGGAATTTGAATGTTTTCAATGGCCAAAACCCTAGAACTCCCAAGGGTGCTGCTTCTCCTGCTCCAAACAATGCTACTCCTTCTCCGTCTTCATCTTCTGCTGCTGCTGCTGCTCCGGCTCCGGGCAACGCTGCTGTGCAAAATGTTGATGTTGCACCTCAAGCTCAGACTCCGATTCCGACTCCTGTTCGCCAGCCTTCTCAAAATGATGAAGAGGCCAAAGTTATTCCAAAGTACAATTCATTGATTTATGAAGCTTTAGCAACAATCAAAGATACCAATGGTTCTGACTTGAATGCTATCATTAGATTCATTGAGCAAAAGCACAACTGGCCTCAAAATCCAAATTTCAGAAGGACACTGGGTTCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAAAAGGTACTAAATGGTTACAAGATAAAGGACACCTCAGTGGGGACGAAGATAGCTGATGACTCAAAACCACCTGCACCAGAAGAAACGGATCTGCCATCCTCATCTAATAATTTTTTTGAACAGGCATCCTCATCTAATAATAATTTGGCATTTGAGGATGCATTGAGGGAAGCTTCTGAAACTCTAGCCTGCAGAGTTGCTGAGGTGGACAACAAGTCATTTTTGGCTGCTGCAGCAGTCAAGGAGACGGAAAGATATGCAAAGTTTCAGGAGGAAAATGATGCAATGTTAATGATTGCAGAAGAGCTTTTAGCAAAATGTATGCTCGGTGGAACTGTTCGCTTCAATTAA 915 0.4284 MGNQKQKWTAEEEEALTKGVNKYGAGKWKHILKDPELSPKLASRSNIDLKDKWRNLNVFNGQNPRTPKGAASPAPNNATPSPSSSSAAAAAPAPGNAAVQNVDVAPQAQTPIPTPVRQPSQNDEEAKVIPKYNSLIYEALATIKDTNGSDLNAIIRFIEQKHNWPQNPNFRRTLGSKLRRLVSQGKLEKVLNGYKIKDTSVGTKIADDSKPPAPEETDLPSSSNNFFEQASSSNNNLAFEDALREASETLACRVAEVDNKSFLAAAAVKETERYAKFQEENDAMLMIAEELLAKCMLGGTVRFN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0413 304 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mal4g0413 304 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 302 - -
Mal4g0413 304 SMART sant 4 59 IPR001005 -
Mal4g0413 304 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 128 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g0413 304 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mal4g0413 304 SMART h15plus2 126 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g0413 304 PANTHER SINGLE MYB HISTONE 4 1 302 IPR044597 GO:0003691
Mal4g0413 304 MobiDBLite consensus disorder prediction 56 90 - -
Mal4g0413 304 CDD SANT_TRF 6 57 - -
Mal4g0413 304 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Mal4g0413 304 SUPERFAMILY "Winged helix" DNA-binding domain 129 198 IPR036390 -
Mal4g0413 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mal4g0413 304 Pfam linker histone H1 and H5 family 130 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal4g0413 304 Gene3D - 125 218 IPR036388 -
Mal4g0413 304 MobiDBLite consensus disorder prediction 33 96 - -
Mal4g0413 304 Gene3D - 2 58 - -
Mal4g0413 304 MobiDBLite consensus disorder prediction 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0413 Mal-Chr4 3531147 3536048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0413 1 301 Single Myb Histone (SMH) Gene Family AT1G72740 43.189 8.93e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal4g0413 Linker_histone 1.6e-09 CL0123