LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g0378	ATGAGCCGCTACGATAGCCGTTCTTCCGACCCTACCTCCTACCGCGACCGTAGAAGTGACTCGGGTCTAGGTGGAGCAACACCTTCAATCAAAAAGGATTACGATGAAGGTGGCTCAGGTTCACCCGCTAGGAAAATTAATCTGGATGGATTACCTCATTTTGAGAAAAATTTCTACTCCGAATCTCCTTCTGTTCGTGCTATGACTGAAACTGAAGTTAATGAGTATCGTCTTCGTCGCGAAATTACTGTTGAAGGCAAAGATGTTCCTAAACCTGTTAAATCCTTTTCTGATGCTGCTTTTCCCGACTATGTGTTGGAAGAAGTTAAAAAAGCTGGTTTTACTGAACCGACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTAATAGGAATTGCAGAGACAGGATCAGGGAAGACACTGGCCTATTTGTTGCCTGCCATAGTGCATGTTAATGCTCAGCCAATTCTAGATCCTGGGGATGGACCTATTGTGTTAGTTTTGGCCCCAACACGTGAACTGGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCAAGGATTAAGAGCACGTGCATATATGGTGGGGTTCCTAAGGGGCCTCAAGTGCGCGATCTCCAGAAAGGCGTTGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGATTGAGTCAAATCATACCAACTTGCGAAGGGTCACGTACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAAATTGTCTCTCAGATTCGTCCAGACCGACAAACTTTATACTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAATTGGCAAGGCAGTTCCTTTATAATCCATACAAAGTAATTATAGGTTCTGAAGATTTAAAAGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAGGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAGGGTTGTGATCAGATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCGGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTTACAGCAGCTAATGCCAGATTTGCAAAGGAACTTATTAGCATACTTGAGGAAGCTGGACAGAGAGTGAGTTCTGAATTGGCAGCAATGGGGCGTGGTGCACCTCCTCCGCCTTCAGGAGGTTTCCGAGACCGAGGCAAGAGTTTTGGCAGTGGTCGCCCATGGAGCTAA	1497	0.4449	MSRYDSRSSDPTSYRDRRSDSGLGGATPSIKKDYDEGGSGSPARKINLDGLPHFEKNFYSESPSVRAMTETEVNEYRLRREITVEGKDVPKPVKSFSDAAFPDYVLEEVKKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSSELAAMGRGAPPPPSGGFRDRGKSFGSGRPWS*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g0378	498	SMART	ultradead3	113	316	IPR014001	-
	Mal4g0378	498	MobiDBLite	consensus disorder prediction	470	498	-	-
	Mal4g0378	498	CDD	DEADc_DDX5_DDX17	105	300	-	-
	Mal4g0378	498	Gene3D	-	306	472	IPR027417	-
	Mal4g0378	498	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	94	122	IPR014014	GO:0003724
	Mal4g0378	498	MobiDBLite	consensus disorder prediction	1	47	-	-
	Mal4g0378	498	Pfam	Helicase conserved C-terminal domain	325	434	IPR001650	-
	Mal4g0378	498	Gene3D	-	57	304	IPR027417	-
	Mal4g0378	498	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	125	300	IPR014001	-
	Mal4g0378	498	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	328	473	IPR001650	-
	Mal4g0378	498	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	450	IPR027417	-
	Mal4g0378	498	SMART	helicmild6	353	434	IPR001650	-
	Mal4g0378	498	PANTHER	LD32873P	49	484	-	-
	Mal4g0378	498	Pfam	DEAD/DEAH box helicase	118	289	IPR011545	GO:0003676\|GO:0005524
	Mal4g0378	498	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	246	254	IPR000629	-
	Mal4g0378	498	CDD	SF2_C_DEAD	313	443	-	-
	Mal4g0378	498	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	49	484	-	-
	Mal4g0378	498	MobiDBLite	consensus disorder prediction	1	17	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g0378	Mal-Chr4	2907945	2913778	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g0378	81	472	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.606	6.68e-78	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g0378	K12823		-	gmx:100790464	899.427